Alternatives and similar repositories for abodybuilder3

Users that are interested in abodybuilder3 are comparing it to the libraries listed below

• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 4 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆87Updated 5 months ago
• AbSciBio / igdesign
  ☆47Updated 10 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆84Updated last year
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆60Updated 2 weeks ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 7 months ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 8 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆70Updated 3 weeks ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆76Updated 2 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆111Updated last month
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆99Updated 3 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆64Updated 2 months ago
• Kuhlman-Lab / evopro
  ☆90Updated last month
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 8 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated last month
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 2 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆84Updated 3 months ago
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆84Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆105Updated 2 weeks ago
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆34Updated 2 years ago
• dina-lab3D / NanoNet
  ☆50Updated 2 years ago
• DeepRank / deeprank2
  An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
  ☆55Updated 10 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆56Updated 2 weeks ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆77Updated 4 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• NREL / EvoProtGrad
  Directed evolution of proteins in sequence space with gradients
  ☆91Updated 3 weeks ago