alexarnimueller / modlAMPLinks
Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
☆60Updated 4 months ago
Alternatives and similar repositories for modlAMP
Users that are interested in modlAMP are comparing it to the libraries listed below
Sorting:
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆89Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 3 months ago
- A software package for computing features of peptides and proteins☆63Updated last year
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆79Updated 11 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 7 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated 2 months ago
- pyFoldX: python bindings for FoldX.☆48Updated 3 years ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆99Updated 3 months ago
- A Python 3 version of the protein descriptor package propy☆42Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Set of useful HADDOCK utility scripts☆53Updated 10 months ago
- PSIPRED Protein Secondary Structure Predictor☆57Updated last week
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆101Updated 2 months ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆17Updated 3 years ago
- ☆50Updated 3 months ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆76Updated 2 years ago
- Neural networks for deep mutational scanning data☆69Updated last month
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆72Updated last year
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆105Updated 11 months ago
- Python package for analysis of antibody heavy and light chains☆25Updated 4 years ago
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- A domain parser for Alphafold models☆38Updated last year
- deep protein solubility prediction☆38Updated 6 years ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆80Updated 4 months ago
- Interactive Python notebooks for PDBe API training☆55Updated 3 weeks ago
- Python package to manage protein structures and their annotations☆43Updated last year
- The DSSP building software☆44Updated last year