Alternatives and similar repositories for ParaSurf

Users that are interested in ParaSurf are comparing it to the libraries listed below

• skalyaanamoorthy / PSLMs
  ☆19Updated 7 months ago
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 9 months ago
• MSDLLCpapers / promb
  Humanness of de-novo designed proteins
  ☆12Updated last month
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆18Updated 6 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• Qrouger / PPIFold
  ☆19Updated last week
• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆11Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆41Updated last month
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆29Updated last year
• SwitchLab-VIB / EvolveX
  EvolveX, a de novo antibody computational design pipeline.
  ☆11Updated 6 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 2 months ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆30Updated 11 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated 6 months ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆14Updated 4 months ago
• mabr3112 / ProtFlow
  A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…
  ☆19Updated 3 weeks ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated last month
• eva-smorodina / antibody_developability
  ☆9Updated 2 years ago
• ld139 / ApoDock_public
  Code for ApoDock
  ☆20Updated 2 months ago
• vttresearch / ActSeek
  Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.
  ☆22Updated 2 weeks ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆29Updated 3 months ago
• ohuelab / MEGADOCK-on-Colab
  MEGADOCK on Google Colaboratory
  ☆17Updated last year
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆18Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆30Updated 2 years ago
• jtrinquier / SoftAlign
  ☆23Updated last month
• alirezaomidi / AFM-IDR
  Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"
  ☆16Updated 6 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last year
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated 3 months ago
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆25Updated last month
• strauchlab / scaffold_design
  ☆17Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 6 months ago