Alternatives and similar repositories for ParaSurf

Users that are interested in ParaSurf are comparing it to the libraries listed below

• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated last week
• mabr3112 / ProtFlow
  A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…
  ☆34Updated last week
• KULL-Centre / _2024_cagiada_stability
  ☆72Updated 10 months ago
• MSDLLCpapers / promb
  Humanness of de-novo designed proteins
  ☆37Updated 8 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 6 months ago
• deskk / AbGPT
  ☆11Updated last year
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆21Updated 2 years ago
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• microsoft / cleavenet
  Deep learning tools for peptide substrate prediction and generation
  ☆35Updated 2 months ago
• lamm-mit / ProteinMechanicsDiffusionDesign
  ☆27Updated last year
• skalyaanamoorthy / PSLMs
  ☆21Updated last year
• MoaazK / deepallo
  A Deep Learning Framework for Allosteric Site Prediction
  ☆15Updated 8 months ago
• BioinfoMachineLearning / MULTICOM4
  The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …
  ☆15Updated 2 months ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated 3 months ago
• BioinfoMachineLearning / MULTICOM3
  The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…
  ☆33Updated 2 years ago
• IBM / AutoPeptideML
  AutoML system for building trustworthy peptide bioactivity predictors
  ☆36Updated last week
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated 8 months ago
• AspirinCode / awesome-BioMolGenFold
  RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding
  ☆40Updated 2 months ago
• HySonLab / LatentDE
  LatentDE: Latent-based Directed Evolution for Protein Sequence Design
  ☆36Updated 9 months ago
• gitter-lab / metl
  Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
  ☆60Updated 3 months ago
• amp91 / PeptideModels
  Code for peptide ligand design with machine learning models.
  ☆29Updated last year
• ullahsamee / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆27Updated 5 months ago
• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆13Updated last year
• lehner-lab / domainome
  ☆16Updated last year
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆36Updated 2 years ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆27Updated 2 years ago
• mnielLab / AbEpiTope-1.0
  AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…
  ☆28Updated 3 months ago
• StatPhysBio / tcr_antigen_design
  ☆13Updated 8 months ago
• jonfunk21 / ProteusAI
  ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…
  ☆66Updated 4 months ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago