aggelos-michael-papadopoulos / ParaSurfLinks
[Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interaction Prediction"
☆24Updated 3 weeks ago
Alternatives and similar repositories for ParaSurf
Users that are interested in ParaSurf are comparing it to the libraries listed below
Sorting:
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Updated last year
- Humanness of de-novo designed proteins☆30Updated 5 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Updated last year
- ☆20Updated last year
- Fragment binding prediction with ColabFold☆37Updated 7 months ago
- Fast, gene-specific joint humanisation of antibody heavy and light chains.☆18Updated 10 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆19Updated 10 months ago
- ☆45Updated last month
- MEGADOCK on Google Colaboratory☆18Updated 2 years ago
- ☆22Updated 6 months ago
- ☆22Updated last week
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 7 months ago
- ☆71Updated 7 months ago
- Machine learning prediction of enzyme optimum pH☆47Updated 6 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 3 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆22Updated 7 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆14Updated 2 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Updated 2 weeks ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆16Updated 10 months ago
- Some scripts that I keep using over and over.☆20Updated 3 months ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆29Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Explicit crosslinks in AlphaFold 3☆23Updated 7 months ago
- Metrics for our protein design competitions.☆35Updated 11 months ago