alchemab / parapred-pytorch
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
☆18Updated last year
Alternatives and similar repositories for parapred-pytorch:
Users that are interested in parapred-pytorch are comparing it to the libraries listed below
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆34Updated last year
- Public repository describing training and testing of AntiBERTa.☆57Updated last year
- Tool for modelling the CDRs of antibodies☆47Updated 2 years ago
- ☆45Updated last year
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 2 years ago
- ☆34Updated 3 years ago
- Predict the structure of immune receptor proteins☆48Updated 3 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 10 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆16Updated 3 years ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆19Updated 3 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 7 months ago
- ☆68Updated 4 years ago
- Fitness landscapes for antibodies☆59Updated last month
- Paratope Prediction using Deep Learning☆59Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆26Updated last month
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- Code for the antibody deep learning paper.☆14Updated 2 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 7 months ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆18Updated 5 months ago
- A Python 3 version of the protein descriptor package propy☆39Updated 2 years ago
- Machine learning-driven antibody design☆54Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 3 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆68Updated last month
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- Inference code for Bio-Inspired Antibody Language Model☆23Updated 5 months ago
- ☆43Updated 3 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- AbLang: A language model for antibodies☆16Updated last year