AutoML system for building trustworthy peptide bioactivity predictors
☆37Feb 19, 2026Updated last week
Alternatives and similar repositories for AutoPeptideML
Users that are interested in AutoPeptideML are comparing it to the libraries listed below
Sorting:
- Independent evaluation set construction for trustworthy ML models in biochemistry☆16Feb 18, 2026Updated last week
- The repo consists of a Python package that works with functional data. In particular, it includes two distinct methodologies: Functional …☆13Sep 18, 2025Updated 5 months ago
- ☆32Mar 18, 2025Updated 11 months ago
- ☆34Jan 26, 2026Updated last month
- Knowledge-enhanced learned representation enriches protein sequence and SMILES drug databases with a large Knowledge Graph fused from dif…☆62Feb 4, 2026Updated 3 weeks ago
- Ontology representing a 360-view of a person (or cohort) that spans across multiple domains, from health to social.☆35Sep 17, 2025Updated 5 months ago
- Tree-Invent: A novel molecular generative model constrained with topological tree☆13Jul 26, 2023Updated 2 years ago
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆35Nov 10, 2025Updated 3 months ago
- ☆62Jan 23, 2026Updated last month
- ☆13Jun 5, 2024Updated last year
- Render viral capsids in the browser and export SVG.☆12Aug 19, 2025Updated 6 months ago
- ☆19Feb 13, 2026Updated 2 weeks ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated last year
- The code was developed for training diverse ML and DL models to predict PROTACs degradation. Data cleaning for two public datasets, PROTA…☆15Oct 31, 2023Updated 2 years ago
- Prediction of glycopeptide fragment mass spectra by deep learning☆10Feb 20, 2024Updated 2 years ago
- Implementation of the Pairformer model used in AlphaFold 3☆14Updated this week
- Post-processing peptide de novo sequences to improve their accuracy☆10Nov 29, 2022Updated 3 years ago
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆59Jan 17, 2026Updated last month
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆48Nov 27, 2025Updated 3 months ago
- ☆12Oct 9, 2024Updated last year
- ☆14Nov 20, 2024Updated last year
- Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction class…☆15Dec 31, 2021Updated 4 years ago
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆28May 10, 2025Updated 9 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Oct 26, 2023Updated 2 years ago
- ☆12Apr 4, 2025Updated 10 months ago
- SmartCADD is an open-source virtual screening platform that combines deep learning, computer-aided drug design (CADD), and quantum mecha…☆30Jan 16, 2025Updated last year
- Bi-Encoder approach for large-scale protein-peptide binding search☆12Jun 14, 2024Updated last year
- Molecular conformer generation using enhanced sampling methods☆20Jul 28, 2025Updated 7 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 3 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 6 months ago
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆113Dec 15, 2025Updated 2 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆115Sep 4, 2025Updated 5 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆37Apr 2, 2025Updated 10 months ago
- ☆17Nov 8, 2024Updated last year
- Insights into the inner workings of transformer models for protein function prediction☆14Feb 9, 2024Updated 2 years ago
- Run OpenMM with forces provided by any Python program☆39Dec 25, 2024Updated last year
- Paper collection about de novo peptide Sequening☆22Feb 5, 2025Updated last year