ml4bio / USPNet
Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
☆29Updated 2 months ago
Alternatives and similar repositories for USPNet:
Users that are interested in USPNet are comparing it to the libraries listed below
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆26Updated last month
- Geometric deep learning of protein–DNA binding specificity☆62Updated 4 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 6 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆79Updated 2 months ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆29Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆48Updated 2 weeks ago
- ☆35Updated 5 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆40Updated 4 months ago
- ColabFold protocol☆48Updated 4 months ago
- Protein language model trained on coding DNA☆46Updated 4 months ago
- PLM based active learning model for protein engineering☆72Updated 6 months ago
- ☆49Updated 8 months ago
- TEIM: TCR-Epitope Interaction Modeling☆45Updated last year
- ☆73Updated 4 months ago
- Code repository of "Deep generative design of RNA family sequences"☆31Updated 7 months ago
- Transformer Based Language Model for Peptide Property Prediction☆37Updated 6 months ago
- ☆65Updated 4 months ago
- ☆41Updated 3 years ago
- ☆28Updated 2 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆100Updated 5 months ago
- ☆96Updated 7 months ago
- ☆46Updated last year
- ☆44Updated last month
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆50Updated 8 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆16Updated 6 months ago
- RiboNucleic Acid (RNA) Language Model☆83Updated 3 months ago
- open source code for Tencent tFold☆81Updated 3 weeks ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 6 months ago
- ☆31Updated 2 years ago
- Feature map and function annotation of Proteins☆31Updated 8 months ago