ml4bio / USPNet
Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
☆31Updated 3 months ago
Alternatives and similar repositories for USPNet:
Users that are interested in USPNet are comparing it to the libraries listed below
- Protein language model trained on coding DNA☆46Updated 5 months ago
- ☆66Updated 5 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆101Updated 6 months ago
- ☆37Updated 6 months ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆28Updated last year
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆27Updated 2 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆41Updated 8 months ago
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆42Updated 5 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 6 months ago
- ☆98Updated 8 months ago
- PLM based active learning model for protein engineering☆74Updated 7 months ago
- Geometric deep learning of protein–DNA binding specificity☆64Updated this week
- ☆49Updated 9 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆59Updated last month
- ☆12Updated last year
- ☆32Updated 6 months ago
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- ☆36Updated 2 months ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32Updated last year
- RNA Multiple Sequence Alignment☆34Updated last year
- ColabFold protocol☆50Updated 5 months ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated 7 months ago
- ☆28Updated 3 years ago
- ☆78Updated 5 months ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆96Updated 6 months ago
- ☆30Updated 3 weeks ago
- ☆41Updated 3 years ago
- Making Protein Modeling Accessible to All Biologists☆102Updated this week
- ☆17Updated last year
- open source code for Tencent tFold☆93Updated last week