bittremieux-lab / ANN-SoLo
Spectral library searching using approximate nearest neighbor techniques.
☆42Updated last week
Alternatives and similar repositories for ANN-SoLo:
Users that are interested in ANN-SoLo are comparing it to the libraries listed below
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated 2 months ago
- A Python interface to proteomics data repositories☆34Updated 2 months ago
- ProteoBench is an open and collaborative platform for community-curated benchmarks for proteomics data analysis pipelines. Our goal is to…☆46Updated this week
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆45Updated this week
- MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.☆43Updated last month
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆24Updated last month
- Python package for investigating the structural context of PTMs☆28Updated 3 months ago
- Democratizing ML in proteomics☆36Updated 2 weeks ago
- A python package for fast post translational modification localization, powered by Cython.☆19Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 6 months ago
- ☆59Updated last year
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆48Updated this week
- ☆26Updated 2 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆85Updated 3 weeks ago
- Community-curated tutorials and datasets for ML in proteomics☆52Updated last month
- MS/MS prediction for peptides☆22Updated 4 years ago
- DeepLC: Retention time prediction for (modified) peptides using Deep Learning.☆63Updated last week
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- ☆24Updated 2 years ago
- Fast and accurate label-free quantification for small and very large numbers of proteomes☆54Updated 2 weeks ago
- Rescoring and spectral library generation pipeline for proteomics.☆43Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- ☆13Updated last year
- ☆10Updated last week
- ☆13Updated 7 months ago
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆20Updated 2 weeks ago
- Python client for PRIDE Archive Rest API.☆23Updated 3 weeks ago
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Updated 3 years ago
- PDV: an integrative proteomics data viewer☆46Updated 3 weeks ago
- A simple tool to help you manually discover the depths of your (complex) spectra, one spectrum at a time.☆26Updated last week