jwintersinger / kablammoLinks
Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
☆67Updated 2 years ago
Alternatives and similar repositories for kablammo
Users that are interested in kablammo are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆61Updated last year
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 2 weeks ago
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- visualising sequence similarity with Circos☆40Updated 5 years ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 5 years ago
- ☆35Updated 2 years ago
- ☆31Updated last year
- SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome data…☆35Updated last year
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 4 months ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆47Updated 8 years ago
- Parse GFF3 into Pandas dataframes☆27Updated last year
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Ultra-efficient taxonomic mapping of NGS data☆52Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated last month
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆37Updated 3 weeks ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Maximum likelihood demultiplexing☆47Updated 4 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 9 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago