jwintersinger / kablammoLinks
Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
☆65Updated 3 years ago
Alternatives and similar repositories for kablammo
Users that are interested in kablammo are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- An imagemagick-like frontend to Biopython SeqIO☆117Updated last year
- Visualization of the pan-genome output by panX☆66Updated 7 months ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.☆25Updated 11 months ago
- A fork of exonerate: a generic tool for sequence alignment☆71Updated 2 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Updated 6 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 3 years ago
- MEGAN Community Edition☆73Updated last year
- Sample search by metadata and features☆47Updated 2 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Fast download BLAST databases from NCBI.☆35Updated 2 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- ☆28Updated 5 years ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆102Updated last week
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated 2 years ago
- Python bindings for the TaxonKit library☆43Updated last week
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago