peterjc / picobio
Miscellaneous Bioinformatics scripts etc mostly in Python
☆45Updated 3 weeks ago
Alternatives and similar repositories for picobio:
Users that are interested in picobio are comparing it to the libraries listed below
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 8 months ago
- Maximum likelihood demultiplexing☆46Updated last month
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- ☆42Updated 11 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 4 months ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- Tools for the analysis of structural variation in genomes☆78Updated last year
- ☆78Updated 11 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Coding Genome Reconstruction using Iso-Seq data☆60Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Error correction for Illumina RNA-seq reads☆65Updated last year
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆58Updated last year
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- ☆47Updated 4 months ago
- UCSC Nanopore☆43Updated 5 years ago