Utilities for downloading and managing protein FASTA files.
☆14Mar 20, 2024Updated 2 years ago
Alternatives and similar repositories for fasta_utilities
Users that are interested in fasta_utilities are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- Navigation links (and brief descriptions) to my repositories.☆13Nov 25, 2025Updated 6 months ago
- A Comet-based, best practices proteomics pipeline.☆39Mar 21, 2024Updated 2 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆13May 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- RKI Metadata Exchange | Software development toolkit for the MEx project that contains utilities for building pipelines and services, inc…☆11Updated this week
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Apr 16, 2026Updated 2 months ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated last month
- Kinase Activity Predictions from shotgun proteomics☆13Apr 18, 2017Updated 9 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- ☆11Jun 2, 2026Updated 2 weeks ago
- ☆17Mar 11, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 5 years ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.☆17Mar 16, 2026Updated 3 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 7 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- Python client for PRIDE Archive Rest API.☆40Jun 8, 2026Updated last week
- Handmade ImageJ / Fiji LUTs for microscopy, scientific good visualization and art.☆14Jan 9, 2025Updated last year
- A Bioconductor/R package for longitudinal system suitability monitoring and quality control for proteomic experiments☆10Feb 7, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.☆12Feb 18, 2022Updated 4 years ago
- Newer Version can be found here: https://github.com/cschlaffner/PROTzilla☆20Apr 22, 2026Updated last month
- DeepTM: A deep learning setup for prediction of transmembrane proteins☆17Jan 2, 2018Updated 8 years ago
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- Conditional Variational Autoencoder for the prediction of site-specific recombinases selective for a specified target site☆12Jun 23, 2023Updated 2 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated 2 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 10 months ago
- A Python package for peptide sequence analysis built around ProForma 2.1 notation. Calculate masses, generate fragments, predict isotopic…☆17May 22, 2026Updated 3 weeks ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dendritic Spine Analysis Software☆12Apr 27, 2023Updated 3 years ago
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.☆17Aug 6, 2019Updated 6 years ago
- ☆14Apr 17, 2019Updated 7 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆13Jun 10, 2026Updated last week
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year