pwilmart / fasta_utilities
Utilities for downloading and managing protein FASTA files.
☆13Updated 10 months ago
Alternatives and similar repositories for fasta_utilities:
Users that are interested in fasta_utilities are comparing it to the libraries listed below
- ☆30Updated 4 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆17Updated 2 weeks ago
- A guide to running MaxQuant in Linux☆32Updated 4 years ago
- PepQuery: a targeted peptide search engine☆9Updated 8 months ago
- DEqMS is a tool for quantitative proteomic analysis☆22Updated last month
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated this week
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- pathway based data integration and visualization☆40Updated 10 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆16Updated 2 years ago
- ☆17Updated 8 months ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆20Updated this week
- visual analysis of your VCF files☆30Updated 2 years ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 8 months ago
- R package for analysing proteomics data☆49Updated last year
- The repo for LFQ-Analyst☆29Updated 5 months ago
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆17Updated this week
- Metagenome analysis using the Kraken software suite☆30Updated 2 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 5 years ago
- Benchmarking of aligners and variant callers for Whole Exome Sequencing data☆19Updated 6 years ago
- Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.☆26Updated last year
- ☆18Updated last year
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆11Updated 2 years ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- CRISPR Indel, base edit analysis☆10Updated 4 years ago
- Time-Course Multi-Omics data integration☆24Updated 9 months ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆27Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆47Updated 3 months ago