Utilities for downloading and managing protein FASTA files.
☆14Mar 20, 2024Updated 2 years ago
Alternatives and similar repositories for fasta_utilities
Users that are interested in fasta_utilities are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for Batch Effects Diagnostics and Correction☆17Apr 25, 2025Updated last year
- RKI Metadata Exchange | Software development toolkit for the MEx project that contains utilities for building pipelines and services, inc…☆11Updated this week
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago
- Navigation links (and brief descriptions) to my repositories.☆14Nov 25, 2025Updated 11 months ago
- A Comet-based, best practices proteomics pipeline.☆40Mar 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)☆13May 20, 2025Updated last year
- Parse ProForma 2.1 peptide sequences and calculate masses, fragments, and isotopic distributions in Python.☆21Updated this week
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆16Oct 23, 2026Updated 2 weeks ago
- R package for DNA methylation analysis☆21Oct 2, 2026Updated last month
- A collection of snakemake scripts to streamline genome annotation☆14Mar 24, 2026Updated 7 months ago
- A tool to detect RRNPP-type quorum sensing systems☆10Mar 24, 2023Updated 3 years ago
- Helper Perl scripts and tree files associated with the EukProt database of genome-scale eukaryotic protein sequence data sets.☆14Nov 30, 2023Updated 2 years ago
- A tool for large scale omics datasets evaluation☆27Jun 14, 2023Updated 3 years ago
- Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.☆26Apr 22, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning☆43Aug 22, 2019Updated 7 years ago
- A tool for visualisation of gene set over-representation analysis (GSOA).☆10Jun 27, 2019Updated 7 years ago
- CRISPRDetect: A flexible algorithm to define CRISPR arrays☆11Jan 20, 2022Updated 4 years ago
- R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …☆31Oct 5, 2026Updated last month
- Kinase Activity Predictions from shotgun proteomics☆13Apr 18, 2017Updated 9 years ago
- Variant sequence context analysis tool☆10Jul 5, 2024Updated 2 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- RRID:SCR_027562☆10Updated this week
- ☆11Dec 31, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 3 years ago
- A label free quantification tool.☆20Jan 13, 2026Updated 9 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 5 months ago
- tyPPing and other methods for detecting phage-plasmids☆14Dec 18, 2025Updated 10 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆20Oct 14, 2020Updated 6 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- Fast, parallelized implementation of Principal Component Analysis with constant memory consumption for large data sets.☆12Feb 18, 2022Updated 4 years ago
- Implementation of the AIControl paper in Julia 1.0☆17Mar 4, 2019Updated 7 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆28Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Bioconductor/R package for longitudinal system suitability monitoring and quality control for proteomic experiments☆11Jul 24, 2026Updated 3 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆41Nov 26, 2020Updated 5 years ago
- Some shell scripts related to Thermo Fisher raw format conversion using msconvert☆15Feb 10, 2026Updated 8 months ago
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- R Interface to UniProt Web Services☆10Jul 21, 2026Updated 3 months ago
- Unbiased single-cell transcriptomic data cell type identification☆15Oct 15, 2026Updated 3 weeks ago
- ☆18Mar 11, 2024Updated 2 years ago