pwilmart / fasta_utilitiesLinks
Utilities for downloading and managing protein FASTA files.
☆13Updated last year
Alternatives and similar repositories for fasta_utilities
Users that are interested in fasta_utilities are comparing it to the libraries listed below
Sorting:
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆19Updated 5 months ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆14Updated 9 months ago
- ☆31Updated 4 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆16Updated 3 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆29Updated 8 months ago
- pathway based data integration and visualization☆41Updated 3 months ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆22Updated this week
- visual analysis of your VCF files☆34Updated 2 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆12Updated 4 years ago
- gutSMASH☆54Updated 6 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 2 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated last month
- PepQuery: a targeted peptide search engine☆12Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 5 months ago
- ☆18Updated 2 years ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 2 months ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆15Updated 9 months ago
- R package for analysing proteomics data☆49Updated 2 years ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated this week
- antimicrobial peptide prediction in R☆31Updated 6 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 6 years ago
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆12Updated 8 months ago
- ☆17Updated last year