barricklab / LTEE-EcoliView external linksLinks
Genomics resources for the Long-Term Evolution Experiment with E. coli
☆18Jul 13, 2025Updated 7 months ago
Alternatives and similar repositories for LTEE-Ecoli
Users that are interested in LTEE-Ecoli are comparing it to the libraries listed below
Sorting:
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Painless timelapsing to show off your productivity.☆17Apr 24, 2020Updated 5 years ago
- Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.☆22Dec 6, 2023Updated 2 years ago
- ☆28Sep 28, 2024Updated last year
- Locus and lineage tests for bacterial GWAS☆28Oct 5, 2017Updated 8 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 5 years ago
- Empowered Nix/Guix without root☆38Jul 7, 2015Updated 10 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 6 months ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Selective Copying Task with Mamba Model. This repository contains a simple implementation for reproducing the selective copying task with…☆12Jun 3, 2024Updated last year
- Agent skills for vLLM☆30Feb 3, 2026Updated last week
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.☆10Apr 16, 2020Updated 5 years ago
- SRA python tools☆11Jun 9, 2021Updated 4 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Code for paper: Localized matrix factorization for recommendation based on matrix block diagonal forms☆10Jan 27, 2015Updated 11 years ago
- Code for DNA plasmid editing.☆44Aug 17, 2018Updated 7 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Apr 20, 2022Updated 3 years ago
- Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis☆13Sep 21, 2022Updated 3 years ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- (PLEASE USE https://github.com/HanKruiger/tsNET) This is here for historical purpose only.☆10Mar 10, 2019Updated 6 years ago
- Cython library for random number generation☆10Jan 24, 2017Updated 9 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Convert DeepBind models to Keras☆11Jul 15, 2018Updated 7 years ago
- ☆10Apr 28, 2023Updated 2 years ago
- ☆10Feb 20, 2024Updated last year
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- ☆78Nov 10, 2025Updated 3 months ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- A prettier index.html for listing public files and folders in Amazon S3 buckets.☆11Apr 4, 2016Updated 9 years ago
- ☆13Jul 18, 2019Updated 6 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆10Feb 24, 2023Updated 2 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 3 weeks ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 4 years ago
- lightning☆11Oct 20, 2015Updated 10 years ago