Genomics resources for the Long-Term Evolution Experiment with E. coli
☆20Jul 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for LTEE-Ecoli
Users that are interested in LTEE-Ecoli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Webserver and command line tool for annotating engineered plasmids☆17May 19, 2026Updated 2 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆210Updated this week
- Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli☆26Mar 11, 2019Updated 7 years ago
- ☆14Jun 18, 2026Updated last month
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆12Dec 10, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Various Ideas for Protein Masked LM with ESMFold/ESM-2☆15Aug 17, 2023Updated 2 years ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆49Dec 21, 2021Updated 4 years ago
- Browser refresh utility☆13Jul 2, 2014Updated 12 years ago
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Predicting ncRNA-protein interaction using high-level features based on deep learning☆15May 2, 2020Updated 6 years ago
- Empowered Nix/Guix without root☆37Jul 7, 2015Updated 11 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Jul 14, 2026Updated last week
- Winsen Sensor ZE03 sensor series library for arduino.☆12Jan 9, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Associated code for EvoWeaver publication☆17May 19, 2025Updated last year
- Run Jupyter on Orchestra 2☆12Jan 18, 2023Updated 3 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Mar 5, 2021Updated 5 years ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 2 months ago
- ☆13Mar 12, 2020Updated 6 years ago
- Protein Design by Machine Learning guided Directed Evolution☆48Jan 1, 2026Updated 6 months ago
- Prion-Like Amino Acid Composition☆18Dec 15, 2025Updated 7 months ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆32Apr 19, 2018Updated 8 years ago
- Cython library for random number generation☆10Jan 24, 2017Updated 9 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆15Apr 21, 2023Updated 3 years ago
- Scripts for next generation sequencing analyses☆15Jul 3, 2026Updated 3 weeks ago
- Browser for ExAC consortium data☆12Oct 23, 2017Updated 8 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 2, 2024Updated 2 years ago
- World’s first Protein sequence Generative Adversarial Network (ProteinGAN)☆15Dec 20, 2018Updated 7 years ago
- Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels☆25Oct 24, 2025Updated 9 months ago
- ☆29Sep 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Predict disorder and disorder binding from AlphaFold structures☆20Nov 25, 2024Updated last year
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆39May 8, 2026Updated 2 months ago
- ☆11Sep 15, 2015Updated 10 years ago
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- Course "Machine learning" in Bioinformatics Institute☆16Apr 23, 2024Updated 2 years ago
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆64Sep 23, 2025Updated 10 months ago
- This is repo for the materials of the BI2023 python course☆21May 4, 2024Updated 2 years ago