benjaminhgood / LTEE-metagenomic
Time-resolved metagenomic sequencing of Lenski's long-term evolution experiment with Escherichia coli
☆23Updated 5 years ago
Alternatives and similar repositories for LTEE-metagenomic:
Users that are interested in LTEE-metagenomic are comparing it to the libraries listed below
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- ☆26Updated 3 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆25Updated 10 months ago
- Error correction for Illumina RNA-seq reads☆64Updated 10 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated this week
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆27Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆43Updated 5 months ago
- StrainFinder☆27Updated 6 years ago
- A package to annotate protein sequences☆54Updated 6 months ago
- Automatically exported from code.google.com/p/prank-msa☆25Updated last year
- De novo transcriptome assembler for short reads☆62Updated 6 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated 7 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Visualize whole genome alignments as linear maps☆70Updated 3 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- A versatile toolkit for k-mers with taxonomic information☆76Updated 5 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆45Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆65Updated last week
- Documentation for Evolview☆26Updated 3 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆87Updated 3 months ago
- Maximum likelihood demultiplexing☆46Updated last year
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago