COG-UK / grapevineLinks
Process consensus file for COG-UK data
☆14Updated 4 years ago
Alternatives and similar repositories for grapevine
Users that are interested in grapevine are comparing it to the libraries listed below
Sorting:
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆42Updated last month
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated last month
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆75Updated last year
- all methods related to Enterobase☆43Updated last year
- Gene-flank analysis tool☆33Updated 11 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- ☆36Updated 7 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆38Updated 3 weeks ago
- Microbiome classification pipeline☆65Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 4 years ago
- Primer schemes for real-time genome epidemiology☆30Updated 2 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- Recombination-free trees☆60Updated 2 months ago