COG-UK / grapevine
Process consensus file for COG-UK data
☆14Updated 3 years ago
Alternatives and similar repositories for grapevine:
Users that are interested in grapevine are comparing it to the libraries listed below
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆30Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- Gene-flank analysis tool☆26Updated last month
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆23Updated last week
- Bifrost graph gene caller.☆91Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month
- Influenza genome analysis Nextflow workflow☆18Updated last week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆34Updated 4 months ago
- Recombination-free trees☆56Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated this week
- ☆31Updated 8 months ago
- ☆27Updated last year
- ☆36Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- ☆35Updated 5 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- BEAV: Bacterial Element Annotation reVamped☆60Updated 2 months ago
- Precise host read removal☆84Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated last year
- A toolkit for prokaryotic comparative genomics☆38Updated 2 months ago
- de novo virus assembler of Illumina paired reads☆54Updated 3 years ago