Process consensus file for COG-UK data
☆13Sep 7, 2021Updated 4 years ago
Alternatives and similar repositories for grapevine
Users that are interested in grapevine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mycobacterial pipeline☆11Sep 11, 2025Updated 7 months ago
- Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses☆16Mar 23, 2026Updated 3 weeks ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 9 months ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Jan 8, 2025Updated last year
- SARS-CoV-2 variant calling and consensus assembly pipeline☆26Sep 18, 2023Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆71Nov 6, 2025Updated 5 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 2 years ago
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Jul 13, 2018Updated 7 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- ☆11Dec 31, 2021Updated 4 years ago
- RAPT Pill - Info / Teardown☆11Jan 30, 2023Updated 3 years ago
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated 2 years ago
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 11 months ago
- nf-test utility functions☆12Mar 5, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Public Health England SNP calling pipeline.☆37Sep 4, 2018Updated 7 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 12 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Ultrafast Sample Placement on Existing Trees☆140Feb 6, 2026Updated 2 months ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- B-cell repertoire and clonal family tree explorer☆17Apr 3, 2026Updated last week
- Add biological annotations to variants in a given VCF file.☆32Apr 4, 2026Updated last week
- From metagenomes to epitopes and beyond☆12Mar 30, 2026Updated 2 weeks ago
- Search text files for DNA sequences and their reverse complements☆13Mar 2, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Mycobacterium tuberculosis complex lineage typing☆10Jun 22, 2025Updated 9 months ago
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- An accelerated framework for manipulating and interpreting high-throughput sequencing data☆26Jul 9, 2013Updated 12 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Apr 8, 2026Updated last week
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆40Nov 11, 2023Updated 2 years ago