Alternatives and similar repositories for amazon-genomics-cli:

Users that are interested in amazon-genomics-cli are comparing it to the libraries listed below

• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆145Updated last year
• aws-samples / amazon-omics-tutorials
  ☆65Updated 2 weeks ago
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆70Updated last month
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆147Updated last year
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆38Updated last year
• google / deepsomatic
  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …
  ☆158Updated last month
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆130Updated 4 months ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆110Updated this week
• awslabs / amazon-omics-tools
  ☆24Updated last week
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆75Updated 2 months ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆154Updated 3 weeks ago
• aws-samples / amazon-omics-webapp-integrations
  This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…
  ☆16Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆175Updated this week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆85Updated last week
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆68Updated this week
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆126Updated 6 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆119Updated this week
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆142Updated 2 weeks ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆91Updated this week
• aws-samples / amazon-omics-end-to-end-genomics
  ☆17Updated last year
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆157Updated this week
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆168Updated 6 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆109Updated last month
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆138Updated this week
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆77Updated last week
• nextflow-io / training
  Nextflow training material
  ☆135Updated this week
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆111Updated this week
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated last week
• awslabs / linter-rules-for-nextflow
  Linter rules for Nextflow DSL scripts
  ☆29Updated 3 weeks ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆195Updated 3 years ago