Alternatives and similar repositories for amazon-genomics-cli

Users that are interested in amazon-genomics-cli are comparing it to the libraries listed below

• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆147Updated last year
• aws-samples / aws-healthomics-tutorials
  ☆79Updated last week
• awslabs / aws-healthomics-tools
  ☆33Updated this week
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆69Updated 3 months ago
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆96Updated 2 years ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 5 months ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆131Updated this week
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆126Updated last year
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆39Updated last year
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated 9 months ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆77Updated last month
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆90Updated 3 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆124Updated this week
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆102Updated last week
• lynnlangit / TeamTeri
  Bioinformatics on GCP, AWS or Azure
  ☆57Updated last month
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated this week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated last week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• ncbi / blast_plus_docs
  ☆113Updated 2 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• google / deepsomatic
  DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …
  ☆173Updated 2 months ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 2 months ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆105Updated 3 years ago
• broadinstitute / warp
  WDL Analysis Research Pipelines
  ☆213Updated this week
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆101Updated this week
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆166Updated 10 months ago
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated last year
• broadinstitute / gnomad_methods
  Hail helper functions for the gnomAD project and Translational Genomics Group
  ☆96Updated this week
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆125Updated last month