Alternatives and similar repositories for amazon-genomics-cli

Users that are interested in amazon-genomics-cli are comparing it to the libraries listed below

• aws-samples / aws-healthomics-tutorials
  ☆86Updated last week
• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆146Updated 2 years ago
• awslabs / aws-healthomics-tools
  ☆40Updated this week
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 months ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆150Updated this week
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆152Updated last year
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated last year
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆83Updated 2 weeks ago
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆99Updated 3 years ago
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆39Updated 2 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆101Updated this week
• seqeralabs / wave
  On-demand containers provisioning service
  ☆50Updated this week
• igvteam / igv-webapp
  IGV Web App
  ☆127Updated 3 weeks ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated 3 weeks ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 7 months ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated this week
• nf-core / website
  Code and files for the main nf-core website.
  ☆85Updated this week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆120Updated last year
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆40Updated 4 years ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆82Updated last month
• basespace / basespace-python-sdk
  BaseSpace Python SDK
  ☆37Updated 4 years ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated 2 years ago
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆80Updated 10 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆61Updated this week
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆87Updated this week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated this week