Alternatives and similar repositories for amazon-genomics-cli

Users that are interested in amazon-genomics-cli are comparing it to the libraries listed below

• aws-samples / aws-healthomics-tutorials
  ☆86Updated 2 months ago
• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆147Updated 2 years ago
• awslabs / aws-healthomics-tools
  ☆39Updated last week
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated 3 months ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆152Updated 11 months ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆107Updated last week
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆150Updated this week
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆83Updated 3 months ago
• igvteam / igv-webapp
  IGV Web App
  ☆126Updated this week
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated last year
• ncbi / blast_plus_docs
  ☆117Updated 3 years ago
• aws-samples / amazon-omics-webapp-integrations
  This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…
  ☆19Updated last year
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 7 months ago
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated 2 years ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated last month
• melaniedavila / cellranger-aws-pipeline
  A cloud-based deployment of the 10x Genomics Cell Ranger software
  ☆14Updated 6 years ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆120Updated last year
• nf-core / website
  Code and files for the main nf-core website.
  ☆83Updated this week
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆99Updated 3 years ago
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆117Updated last year
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆184Updated 6 months ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated last week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆151Updated this week
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 6 months ago
• basespace / basespace-python-sdk
  BaseSpace Python SDK
  ☆37Updated 4 years ago
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆39Updated 2 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 4 months ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆151Updated last week