Alternatives and similar repositories for amazon-genomics-cli

Users that are interested in amazon-genomics-cli are comparing it to the libraries listed below

• aws-samples / aws-genomics-workflows
  Genomics Workflows on AWS
  ☆147Updated 2 years ago
• aws-samples / aws-healthomics-tutorials
  ☆85Updated 3 weeks ago
• awslabs / aws-healthomics-tools
  ☆39Updated last week
• 4dn-dcic / tibanna
  Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…
  ☆71Updated last month
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 9 months ago
• nf-core / test-datasets
  Test data to be used for automated testing with the nf-core pipelines
  ☆142Updated this week
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆81Updated 3 weeks ago
• broadinstitute / genomics-in-the-cloud
  Source code and related materials for the O'Reilly book
  ☆97Updated 3 years ago
• ENCODE-DCC / caper
  Cromwell/WDL wrapper for Python
  ☆58Updated 2 years ago
• seqeralabs / nextflow-tutorial
  Nextflow training material for introductory tutorial
  ☆107Updated 3 years ago
• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆106Updated 2 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆104Updated this week
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆117Updated 11 months ago
• lynnlangit / aws-for-bioinformatics
  AWS for Bioinformatics Researchers
  ☆183Updated 4 months ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 4 months ago
• openwdl / learn-wdl
  Educational materials for learning WDL
  ☆131Updated last year
• aws-quickstart / quickstart-illumina-dragen
  AWS Quick Start Team
  ☆24Updated last year
• igvteam / igv-webapp
  IGV Web App
  ☆126Updated 2 weeks ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆60Updated this week
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆94Updated last month
• awslabs / genomics-secondary-analysis-using-aws-step-functions-and-aws-batch
  This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…
  ☆39Updated last year
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆150Updated last week
• nf-core / website
  Code and files for the main nf-core website.
  ☆81Updated this week
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆88Updated 3 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 5 months ago
• griffithlab / pVACtools
  ☆164Updated this week
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆195Updated this week
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆39Updated 4 years ago
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆107Updated last year
• mckennalab / FlashFry
  FlashFry: The rapid CRISPR target site characterization tool
  ☆77Updated last year