ahmadpgh / deepSimDEFLinks
deepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene products (RNAs, proteins, etc).
☆13Updated 3 years ago
Alternatives and similar repositories for deepSimDEF
Users that are interested in deepSimDEF are comparing it to the libraries listed below
Sorting:
- Toolkit for constructing, analyzing, and visualizing data-driven ontologies☆18Updated 5 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- ☆19Updated 2 years ago
- A package for making MuE observation models in Edward2.☆13Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆14Updated 4 years ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆26Updated 2 years ago
- HiDeF (Hierarchical community Decoding Framework)☆14Updated last year
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated 6 months ago
- ☆10Updated 4 years ago
- NeST-VNN repo☆10Updated last year
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated last week
- Fit generalized linear models in python.☆27Updated 2 years ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- Align sequences and then parse features.☆18Updated 2 months ago
- PyIOmica (pyiomica) is a Python package for omics analyses.☆15Updated 2 years ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Python interface to amino acid properties and IEDB☆56Updated 8 months ago
- Disease pathways in the human interactome☆22Updated 7 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated 3 weeks ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Interpretable splicing model☆20Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆21Updated last year
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 11 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year