mebbert / VariantToolChestLinks
VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and help improve existing tools. VTC currently provides two powerful tools: (1) SetOperator for performing powerful set operations; and (2) VarStats for various statistics on VCF files.
☆25Updated 9 years ago
Alternatives and similar repositories for VariantToolChest
Users that are interested in VariantToolChest are comparing it to the libraries listed below
Sorting:
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- ☆20Updated 8 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- myVCF: a web-based platform for target and exome mutations data management☆20Updated 4 years ago
- Q ChIP-seq peak caller☆18Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- ☆16Updated 8 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆34Updated 11 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago