Alternatives and similar repositories for NeoepProcessing:

Users that are interested in NeoepProcessing are comparing it to the libraries listed below

• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• hase62 / Neoantimon
  Published at Bioinformatics
  ☆12Updated 8 months ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆28Updated 3 years ago
• farkkilab / scarHRD
  Package for calculation of Homologous Recombination Deficiency
  ☆13Updated 4 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆24Updated 7 months ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 2 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆23Updated 4 years ago
• Sidra-TBI-FCO / ISPC
  Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)
  ☆10Updated 4 years ago
• bhklab / Xeva
  XEnograft Visualization & Analysis
  ☆11Updated 2 weeks ago
• ELELAB / MoonlightR
  ☆17Updated 10 months ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• dfci / pancanmet_analysis
  Software and analysis of metabolism studies across multiple cancer types
  ☆9Updated 7 years ago
• ELELAB / CAncer-bioMarker-Prediction-Pipeline-CAMPP
  The Cancer bioMarker Prediction Pipeline (CAMPP)
  ☆17Updated 4 years ago
• taoshengxu / CancerSubtypes
  ☆16Updated 2 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆13Updated 3 years ago
• ICBI / neoantigeR
  a R package to identify neoantigens from NGS data
  ☆19Updated 7 years ago
• kbvstmd / ProGeo-neo
   a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection
  ☆24Updated 2 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆31Updated 3 years ago
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆12Updated last year
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆18Updated 5 years ago
• liuhong-jia / scAnno
  ☆24Updated 2 years ago
• zhiyhu / NMD-paper
  A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay
  ☆14Updated 4 years ago
• vanallenlab / neoantigen_calling_pipeline
  Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA
  ☆12Updated 2 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆29Updated 5 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated 2 months ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 3 months ago