ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
☆25Oct 30, 2025Updated 4 months ago
Alternatives and similar repositories for ONCOCNV
Users that are interested in ONCOCNV are comparing it to the libraries listed below
Sorting:
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- ☆14Apr 20, 2023Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Sep 23, 2017Updated 8 years ago
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 10 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 2 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 3 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Feb 19, 2026Updated last week
- NGSTools☆16Mar 3, 2017Updated 8 years ago
- A modular annotation tool for genomic variants☆146Updated this week
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 2 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33May 15, 2019Updated 6 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Apr 14, 2023Updated 2 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆22Feb 17, 2025Updated last year
- ☆22Feb 5, 2025Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- Somatic variant identification from unpaired samples☆15Jan 31, 2017Updated 9 years ago
- ☆18Aug 22, 2021Updated 4 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- ☆24Updated this week
- ☆18May 31, 2024Updated last year
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- PRS-on-SPARK☆18Feb 4, 2021Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- Telomerecat: The telomere computational analysis tool☆21Aug 4, 2021Updated 4 years ago
- ☆23Mar 20, 2024Updated last year
- Draw phylogenetic trees of tumor evolution☆87Jul 21, 2023Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆55Oct 9, 2025Updated 4 months ago
- VariantGrid public repo☆24Updated this week
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- ☆23Nov 28, 2025Updated 3 months ago