BoevaLab / ONCOCNV
ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
☆25Updated 2 years ago
Alternatives and similar repositories for ONCOCNV:
Users that are interested in ONCOCNV are comparing it to the libraries listed below
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- CN-Learn☆29Updated 5 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ☆52Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆45Updated 5 years ago
- ☆24Updated 5 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- CNV screening and annotation tool☆24Updated 8 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆27Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- ☆39Updated 9 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆57Updated 3 months ago
- Burden testing against public controls☆50Updated 11 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ☆13Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated last week
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- ☆26Updated 11 months ago