BoevaLab / ONCOCNVLinks
ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
☆25Updated 2 years ago
Alternatives and similar repositories for ONCOCNV
Users that are interested in ONCOCNV are comparing it to the libraries listed below
Sorting:
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- ☆21Updated last week
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 3 months ago
- QDNAseq package for Bioconductor☆51Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Tumor Mutational Burden☆61Updated last month
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated this week
- ☆46Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- CN-Learn☆30Updated 5 years ago
- ☆43Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- ☆72Updated 2 years ago
- ☆53Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆74Updated 3 years ago