ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
☆26Oct 30, 2025Updated last year
Alternatives and similar repositories for ONCOCNV
Users that are interested in ONCOCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Apr 20, 2023Updated 3 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 8 years ago
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Circular binary segmentation algorithm for copy number data☆12Oct 8, 2023Updated 3 years ago
- ☆44Feb 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- ☆10Jan 12, 2022Updated 4 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 9 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 11 years ago
- python stuff I use☆21Feb 16, 2026Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Somatic variant identification from unpaired samples☆15Jan 31, 2017Updated 9 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 9 years ago
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- ☆18Feb 25, 2022Updated 4 years ago
- A modular annotation tool for genomic variants☆164Updated this week
- A pipeline creation tool using Snakemake☆14Updated this week
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆166Mar 28, 2023Updated 3 years ago
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆49Jun 2, 2020Updated 6 years ago
- ☆11Aug 28, 2026Updated 2 months ago
- Generic human DNA variant annotation pipeline☆59Aug 11, 2026Updated 2 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- ☆44Nov 18, 2019Updated 6 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- RPKM for RNASeq counts☆16Oct 24, 2020Updated 6 years ago
- Predicts which missense mutations will drive growth of human cancers☆12Sep 2, 2026Updated last month
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- ☆25Mar 20, 2024Updated 2 years ago
- Variant quality checking scripts.☆12Feb 4, 2016Updated 10 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago