ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
☆25Oct 30, 2025Updated 10 months ago
Alternatives and similar repositories for ONCOCNV
Users that are interested in ONCOCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Apr 20, 2023Updated 3 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆38Sep 23, 2017Updated 8 years ago
- A tool to call somatic single nucleotide variants.☆41Aug 21, 2015Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- python stuff I use☆20Feb 16, 2026Updated 6 months ago
- Somatic variant identification from unpaired samples☆16Jan 31, 2017Updated 9 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 9 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- A modular annotation tool for genomic variants☆159Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- VariantGrid public repo☆27Updated this week
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- ☆17Nov 3, 2023Updated 2 years ago
- Generic human DNA variant annotation pipeline☆60Aug 11, 2026Updated 2 weeks ago
- Differential Mutation Analysis☆11May 24, 2020Updated 6 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆61Jul 27, 2026Updated last month
- ☆46Nov 18, 2019Updated 6 years ago
- ☆24Mar 20, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 2 months ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Jul 14, 2026Updated last month
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆34May 15, 2019Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- RPKM for RNASeq counts☆16Oct 24, 2020Updated 5 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆96Jun 29, 2026Updated 2 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆117Apr 23, 2024Updated 2 years ago
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 10 years ago
- ☆57Jan 11, 2023Updated 3 years ago