BoevaLab / ONCOCNVLinks
ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data
☆25Updated last month
Alternatives and similar repositories for ONCOCNV
Users that are interested in ONCOCNV are comparing it to the libraries listed below
Sorting:
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- CN-Learn☆30Updated 5 years ago
- ☆21Updated 2 weeks ago
- Fork of the Polysolver project☆33Updated 6 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- ☆46Updated 6 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 6 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 3 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53Updated 3 years ago
- ☆26Updated last year
- ☆26Updated 6 years ago
- ☆43Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Tumor Mutational Burden☆63Updated 4 months ago
- ☆54Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- ☆31Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Burden testing against public controls☆50Updated last year
- Assign gene names to regions in a BED file☆25Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago