NIH-HPC / singularity-examples
example singularity definition files and demos
☆27Updated 6 years ago
Alternatives and similar repositories for singularity-examples:
Users that are interested in singularity-examples are comparing it to the libraries listed below
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- ☆13Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Misc. utilities☆11Updated 5 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆14Updated 2 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 4 months ago
- definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster☆29Updated 3 years ago
- Howto and implementation documentation☆22Updated last week
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- Dockerfile to build a container with SGE installed☆24Updated 8 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Updated 8 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- convert a singularity image back to Docker, full circle! #containerfriends☆22Updated 4 years ago
- R tools to interact with hap.py output☆15Updated 5 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- Workflow Description Language - Specification and Implementations☆26Updated 5 years ago
- Target discovery platform for exploring rankings of genes, disease models, and other entities. @JKU-ICG @datavisyn☆12Updated 11 months ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- ☆28Updated 6 years ago
- Introduction to Snakemake for Bioinformatics☆19Updated this week
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- c++ library for representing and interacting the gated cytometry data structure☆12Updated this week
- Open Targets Genetics UI☆14Updated last year
- ☆27Updated 2 weeks ago
- AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works☆11Updated 2 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated 3 months ago
- UChicago BSD Quantitative Bootcamp 2020☆10Updated 3 years ago