NIH-HPC / singularity-examples
example singularity definition files and demos
☆27Updated 6 years ago
Alternatives and similar repositories for singularity-examples:
Users that are interested in singularity-examples are comparing it to the libraries listed below
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- UChicago BSD Quantitative Bootcamp 2020☆11Updated 3 years ago
- X things you should take into consideration if you code for big data analysis☆23Updated 6 years ago
- Class materials for the NIH HPC snakemake class☆16Updated 6 months ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆16Updated last year
- ☆13Updated 7 years ago
- Misc. utilities☆11Updated 5 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆14Updated 2 years ago
- Howto and implementation documentation☆22Updated 2 weeks ago
- source code for HpcGridRunner☆17Updated 3 years ago
- Flexible omics pipeline☆18Updated 8 months ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Introduction to Snakemake for Bioinformatics☆19Updated this week
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated 2 years ago
- ☆28Updated 6 years ago
- Genomics Research Container Architecture☆48Updated 5 years ago
- Universal RObust Peak Annotator☆15Updated last year
- An Easy to Use Analysis System for All Human Public bulk RNAseq Data!☆18Updated 2 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Updated last month
- beRi "beri environments for R installations" is an R environment, R installation, and R package management system for R☆14Updated 5 years ago
- Dockerfiles to build Biopython instances☆28Updated 8 years ago
- Materials for GCB535 at Penn.☆20Updated 5 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Dockerfile to build a container with SGE installed☆24Updated 9 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated 4 months ago