NIH-HPC / singularity-examples
example singularity definition files and demos
☆27Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for singularity-examples
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Updated 5 years ago
- Class materials for the NIH HPC snakemake class☆16Updated last month
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- Distinguishing between generic and experiment-specific gene expression signals.☆12Updated last year
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- R tools to interact with hap.py output☆15Updated 5 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 2 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 5 years ago
- A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow☆18Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆21Updated 4 years ago
- WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus☆10Updated 6 years ago
- Computational Framework to reconstructing tumor clone structures☆15Updated 3 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated 10 months ago
- Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software re…☆10Updated 4 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 7 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆18Updated 9 months ago
- Universal RObust Peak Annotator☆15Updated 10 months ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 8 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- ☆11Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 3 years ago
- Howto and implementation documentation☆21Updated this week
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago