zwdzwd / sesame
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
☆71Updated 2 months ago
Alternatives and similar repositories for sesame:
Users that are interested in sesame are comparing it to the libraries listed below
- Full-length transcriptome splicing and mutation analysis☆81Updated 9 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆103Updated 11 months ago
- Battenberg R package for subclonal copynumber estimation☆86Updated last week
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆67Updated last week
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 3 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 4 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 5 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆129Updated 9 months ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated last week
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- Software program for checking sample matching for NGS data☆129Updated 9 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- Publication quality NGS track plotting☆112Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆38Updated 3 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- Precision HLA typing from next-generation sequencing data☆64Updated last week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 2 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆51Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆73Updated 8 months ago
- R package for bcbio RNA-seq analysis.☆62Updated 6 months ago
- mgatk: mitochondrial genome analysis toolkit☆107Updated 2 months ago