Simulation tool for ChIP- and other -seq experiments
☆14Mar 13, 2023Updated 3 years ago
Alternatives and similar repositories for chips
Users that are interested in chips are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 7 months ago
- ☆13Mar 16, 2026Updated last week
- Accurate microsatellite genotypes from high-throughput resequencing data☆24Sep 26, 2014Updated 11 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- ☆16Jan 2, 2024Updated 2 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Impute DNA methylation from WGBS data.☆11Apr 23, 2019Updated 6 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- simplified cellranger for long-read data☆20Aug 27, 2025Updated 6 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- ☆13Mar 1, 2026Updated 3 weeks ago
- Beeswarm plots for python☆34Nov 2, 2015Updated 10 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 6 months ago
- ☆31Jul 8, 2025Updated 8 months ago
- A developed pipeline for expressed endogenous retrovirus identification.☆16Oct 9, 2024Updated last year
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 3 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 2 months ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- ☆14Mar 13, 2026Updated last week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- A mobile QML app for interfacing with the Galaxy API☆14Dec 7, 2015Updated 10 years ago
- Tutorials in datamining and bioinformatics☆12Jan 18, 2024Updated 2 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- TF analysis from epigenetic and Hi-C data☆19Apr 1, 2025Updated 11 months ago
- Snakemake workflow management system and CLI generation tool☆65Oct 22, 2025Updated 5 months ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 6 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆34Aug 1, 2024Updated last year
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- A sort-of-proxy solution for multiprocess communication using Pipe from mulitprocessing.☆11Nov 13, 2017Updated 8 years ago