gymreklab / chips

Related projects: ⓘ

• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆22Updated 2 weeks ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆22Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆27Updated 4 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated 5 months ago
• aquaskyline / 16GT
  Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
  ☆27Updated 8 months ago
• jts / mbtools
  ☆13Updated last year
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆16Updated 2 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆30Updated 7 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆34Updated 2 weeks ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last month
• mcfrith / dnarrange
  ☆15Updated 4 months ago
• gjun / muCNV
  ☆20Updated 9 months ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 3 months ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆23Updated 8 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆38Updated 3 weeks ago
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated last month
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆17Updated last year
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated last week
• hoffmangroup / umap
  ☆23Updated 5 months ago
• LappalainenLab / lorals
  ☆31Updated last year
• lh3 / lianti
  Tools to process LIANTI sequence data
  ☆23Updated 5 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆20Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 5 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 2 years ago
• XiDsLab / TAGET
  ☆14Updated last year