gymreklab / chipsLinks
Simulation tool for ChIP- and other -seq experiments
☆14Updated 2 years ago
Alternatives and similar repositories for chips
Users that are interested in chips are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- Third-generation fusion gene detection☆13Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- SingleCell Nanopore sequencing data analysis☆63Updated 7 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆34Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆30Updated 6 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- ☆23Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Genomic Association Tester☆35Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated last month
- ☆51Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- ☆34Updated 2 months ago
- ☆27Updated 8 months ago
- Long read to rMATS☆32Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago