imagej / i2k-2020-pyimagej
Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference
☆13Updated 2 years ago
Related projects: ⓘ
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆63Updated 2 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆63Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆77Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated 11 months ago
- Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data☆18Updated 5 months ago
- website for the napari image viewer☆44Updated this week
- Cell tracking and segmentation software☆85Updated last week
- ☆42Updated 3 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆24Updated 8 months ago
- ☆20Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆47Updated last week
- Particle tracking by solving linear assignment problem.☆49Updated 2 weeks ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- ☆28Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆45Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆59Updated 2 weeks ago
- StarDist plugin for napari☆35Updated 3 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆31Updated 2 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆16Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆17Updated last year
- A napari plugin for making animations☆76Updated 2 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated 4 months ago
- Running compute-intense parts of BigStitcher distributed☆17Updated last week
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆25Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆121Updated 2 weeks ago
- Read and write ImageJ ROI format☆63Updated this week
- ☆17Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year