Alternatives and similar repositories for scATAC-Manuscript

Users that are interested in scATAC-Manuscript are comparing it to the libraries listed below

• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆21Updated last year
• wenweixiong / MARVEL
  ☆49Updated 10 months ago
• satijalab / PASTA
  ☆20Updated 9 months ago
• gxiaolab / scAllele
  ☆34Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• UPSUTER / GEMLI
  ☆31Updated 4 months ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago
• aertslab / scATAC-seq_benchmark
  ☆17Updated last year
• xmuhuanglab / eNet
  ☆12Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆15Updated last year
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆27Updated last month
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated 11 months ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 7 months ago
• BMILAB / scAPAtrap
  ☆20Updated last year
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 10 months ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆27Updated 7 months ago
• Xieeeee / Droplet-Hi-C
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆13Updated last month
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆26Updated 2 months ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• JiaqiLiZju / CelltypeEvolution
  Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases
  ☆18Updated 4 years ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated 2 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆31Updated 9 months ago
• McGranahanLab / ImmuneLENS
  ☆13Updated 3 months ago