gozsari / ProtFeat
ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.
☆19Updated 7 months ago
Alternatives and similar repositories for ProtFeat:
Users that are interested in ProtFeat are comparing it to the libraries listed below
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Efficient implementatin of ESM family.☆55Updated 3 months ago
- Structure-Informed Protein Language Model☆32Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated 11 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆22Updated 9 months ago
- ☆46Updated 6 months ago
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆30Updated 4 months ago
- Extension of ThermoMPNN for double mutant predictions☆32Updated last month
- ☆34Updated 7 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆50Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 3 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- ☆68Updated 4 years ago
- An antibody-specific language model focusing on NGL prediction☆26Updated 8 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆54Updated last year
- ☆32Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 10 months ago
- ☆48Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated 6 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆36Updated 2 years ago
- Efficient manipulation of protein structures in Python☆53Updated 5 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆17Updated last month
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 4 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- ☆62Updated 3 years ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- Machine learning models for antibody sequences in PyTorch☆39Updated 3 years ago
- ☆37Updated last year