Inference and numerics for multi-hybrid AI model architectures
☆111Jun 16, 2026Updated 3 months ago
Alternatives and similar repositories for vortex
Users that are interested in vortex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pretraining infrastructure for multi-hybrid AI model architectures☆255Feb 20, 2026Updated 7 months ago
- Genome modeling and design across all domains of life☆4,253Jun 19, 2026Updated 3 months ago
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆441Mar 7, 2024Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- a pytorch version for GREMLIN, used to predict the protein contacts by coevolution method.☆17May 30, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BioNeMo Recipes: For building and adapting AI models in drug discovery at scale☆865Updated this week
- Neural networks to model BCR affinity maturation☆20May 11, 2026Updated 5 months ago
- systematic explanation of attribution-based mechanisms for regulatory genomics☆17Sep 16, 2026Updated 3 weeks ago
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated 2 weeks ago
- Benchmarks for classification of genomic sequences☆184Aug 14, 2025Updated last year
- State-of-the-art ab initio prediction of 1D protein structure annotations☆13Feb 28, 2021Updated 5 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 4 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated 2 years ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆63Jul 17, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star☆384Updated this week
- ☆79Oct 19, 2024Updated last year
- Code for "Foundation Models Improve Perturbation Response Prediction"☆29Apr 16, 2026Updated 5 months ago
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆23Aug 1, 2025Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆131Dec 10, 2025Updated 10 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆810Apr 22, 2025Updated last year
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 10 months ago
- Biological foundation modeling from molecular to genome scale☆1,576Mar 20, 2026Updated 6 months ago
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Collection of mRNA benchmarks☆54Sep 5, 2026Updated last month
- ☆19Oct 8, 2020Updated 6 years ago
- Research code accompanying AlphaGenome☆901Updated this week
- This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.☆2,188Updated this week
- ☆35Aug 15, 2026Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 5 years ago
- ☆40Jun 20, 2022Updated 4 years ago
- Computational Optimization of DNA Activity (CODA)☆69Apr 3, 2025Updated last year
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆60Apr 30, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆54Sep 4, 2025Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆18Sep 10, 2024Updated 2 years ago
- Foundation Models for Genomics & Transcriptomics☆923Feb 24, 2026Updated 7 months ago
- A python package for showing JBrowse views☆27Jul 22, 2026Updated 2 months ago
- A universal infrastructure layer for generative biology☆135Updated this week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 5 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year