Alternatives and similar repositories for ModelCIF:

Users that are interested in ModelCIF are comparing it to the libraries listed below

• rcsb / strucmotif-search
  Real-time structure motif searching in protein 3D structures using an inverted index strategy
  ☆11Updated last week
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆17Updated 4 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 3 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆21Updated last month
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆47Updated this week
• mirabdi / PDAnalysis
  ☆31Updated last year
• ihmwg / python-modelcif
  Python package for handling ModelCIF mmCIF and BinaryCIF files
  ☆12Updated 2 months ago
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated last year
• lcbc-epfl / metal-site-prediction
  ☆39Updated last year
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆25Updated 6 months ago
• whitead / protein-emoji
  Files and utilities for protein-emoji
  ☆21Updated 2 years ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆28Updated last week
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆27Updated last year
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated last week
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 3 weeks ago
• THGLab / int2cart
  Building more accurate protein structures from backbone torsion angles
  ☆14Updated 3 weeks ago
• alexiscourbet / Computational-design-of-protein-nanomachines
  Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…
  ☆10Updated 3 years ago
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• BioComputingUP / ring-pymol
  This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
  ☆26Updated 2 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆46Updated 4 months ago
• bwicky / oligomer_hallucination
  ☆35Updated last year
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆53Updated 5 months ago
• tommyhuangthu / UniDesign
  a universal framework for computational protein design
  ☆35Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆22Updated last year
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆14Updated 2 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆24Updated 2 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 8 months ago