Deep-Breeding / GEFormerLinks
GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict maize phenotypes using genotype and environment jointly.
☆11Updated 4 months ago
Alternatives and similar repositories for GEFormer
Users that are interested in GEFormer are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 months ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Updated last year
- Toolkits Integrated for Genetic and Evolutionary Research☆16Updated 2 weeks ago
- ☆24Updated last year
- Repository for code used for publications☆28Updated 5 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆55Updated 5 months ago
- A deeplearning driving bioinformatic toolkit.☆18Updated last month
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- NLR annotation tool☆27Updated last year
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- Scripting analyses of genomes in Ensembl Plants☆40Updated last week
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Updated 3 months ago
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆19Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆34Updated last week
- DNA序列比对结果 可视化展示工具☆51Updated 2 years ago
- ☆43Updated 8 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆19Updated last month
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated 2 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Updated 9 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆14Updated 2 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆77Updated 5 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆40Updated 8 months ago
- A pipeline for isoseq☆23Updated 7 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆18Updated 2 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆29Updated last year
- ☆40Updated 2 months ago
- Workflow for Building Microsynteny Networks☆55Updated 2 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆50Updated 8 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 3 weeks ago
- ☆18Updated 2 years ago