GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict maize phenotypes using genotype and environment jointly.
☆14Jan 15, 2026Updated last month
Alternatives and similar repositories for GEFormer
Users that are interested in GEFormer are comparing it to the libraries listed below
Sorting:
- ☆17Jun 14, 2025Updated 8 months ago
- A deeplearning driving bioinformatic toolkit.☆25Jul 14, 2025Updated 7 months ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Dec 11, 2023Updated 2 years ago
- Repository for code used for publications☆30Oct 20, 2025Updated 4 months ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated 10 months ago
- A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and …☆42Dec 18, 2024Updated last year
- GPU accelerated GWAS framework based on TensorFlow☆33Jul 6, 2023Updated 2 years ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated 8 months ago
- ☆13Oct 15, 2024Updated last year
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- Optimization solvers in pure Python: LP, MILP, SAT, constraint programming, graph and metaheuristics. No dependencies. Solvor all your op…☆25Feb 1, 2026Updated 3 weeks ago
- ☆11Updated this week
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- Convolutional Channel-wise Competitive Learning for the Forward-Forward Algorithm. AAAI 2024☆11Jun 27, 2024Updated last year
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆11Dec 3, 2023Updated 2 years ago
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated last week
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆48Jun 4, 2025Updated 8 months ago
- Transform natural language into beautiful, interactive data visualizations using the Model Context Protocol (MCP) with Claude Desktop int…☆16Jun 27, 2025Updated 8 months ago
- Using near-infrared spectroscopy (NIRS) and machine learning to determine oleic acid content from peanut raw grains☆12Apr 6, 2022Updated 3 years ago
- ☆11Aug 20, 2019Updated 6 years ago
- ☆12Jun 27, 2024Updated last year
- This construct builds some elements for you to quickly launch an EMR Serverless application. After submitting the Emr Serverless job, you…☆11Nov 18, 2025Updated 3 months ago
- 云南师范大学校园网认证☆11Oct 27, 2024Updated last year
- ☆15Mar 24, 2025Updated 11 months ago
- ☆11Jan 31, 2018Updated 8 years ago
- ☆11Mar 4, 2025Updated 11 months ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- Integrative protein sequence design with evolutionary multiobjective optimization.☆12Jul 16, 2024Updated last year
- A website to predict phenotypes of soybean by uploading .vcf files.☆17Mar 13, 2024Updated last year
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 2 years ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆19Oct 31, 2025Updated 4 months ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- ☆113Oct 3, 2025Updated 4 months ago
- UI for RipGrep☆19Jan 22, 2026Updated last month
- This is a named entity recognition (NER) dataset for OSINT towards the national defense domain.☆10Apr 21, 2023Updated 2 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- Shiu Lab code base for Machine Learning implemented in SciKit-Learn☆13Oct 5, 2021Updated 4 years ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 3 years ago