mbhall88 / NanoVarBenchLinks
Evaluating Nanopore-based bacterial variant calling
☆20Updated 3 months ago
Alternatives and similar repositories for NanoVarBench
Users that are interested in NanoVarBench are comparing it to the libraries listed below
Sorting:
- A new high-resolution long-read metagenome assembler for even noisy reads☆101Updated last month
 - Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 7 months ago
 - Recombination-free trees☆60Updated 2 months ago
 - Genome size estimation from long read overlaps☆62Updated last week
 - Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
 - a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
 - Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
 - Bacterial GWAS analysis☆45Updated last week
 - Identify short variants and structural variants from raw sequencing data or genomic sequences☆33Updated last year
 - Plasmid analysis using rearrangement distances☆46Updated last month
 - A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
 - Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
 - Colinear block visualisation tool☆31Updated last year
 - Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
 - A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
 - Split k-mer analysis – version 2☆96Updated 2 weeks ago
 - a python package for automated generation of phylogenetic trees from genbank files☆23Updated 7 months ago
 - A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
 - Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
 - Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
 - reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
 - Bifrost graph gene caller.☆95Updated last month
 - Gene-flank analysis tool☆33Updated 10 months ago
 - Microbial agile accurate SNP Typer☆29Updated last year
 - Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
 - More scalable dereplication for metagenome assembled genomes☆71Updated 3 weeks ago
 - Split Kmer Analysis☆65Updated 3 years ago
 - A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
 - Population analysis PIPEline 🛠🧬☆22Updated 6 months ago
 - Genomewide Epistasis Analysis on Bacteria☆15Updated 5 months ago