Used to trim off the primer sequence from mutiplex amplicon sequencing
☆24Dec 20, 2025Updated 8 months ago
Alternatives and similar repositories for pTrimmer
Users that are interested in pTrimmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STR genotyping with WGS and Amplicon/Target sequencing data☆16Feb 2, 2026Updated 7 months ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 10 years ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Aug 13, 2026Updated 3 weeks ago
- Optimise PCR primer-set grouping for genetics research☆18Jun 3, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Primer schemes for real-time genome epidemiology☆31Jun 14, 2023Updated 3 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 7 months ago
- ThermoAlign: software for automated primer design☆27Apr 14, 2018Updated 8 years ago
- Variant call verification☆19May 12, 2025Updated last year
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 4 years ago
- ☆32Sep 21, 2023Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- k-mer probability logo☆12Jan 20, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆137Updated this week
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Influenza data pipeline to automate genotyping assignment☆45Mar 19, 2026Updated 5 months ago
- Hackintosh EFI Folder for Dell OptiPlex 9020 SFF☆10Apr 9, 2020Updated 6 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 6 years ago
- Fast viral consensus genome reconstruction☆27Jun 19, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Sorts amplicons from Nanopore sequencing data based on similarity☆45Oct 9, 2025Updated 10 months ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- Sequences from HIV Easily Reconstructed☆29May 3, 2024Updated 2 years ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆121Updated this week
- Ready-made Taxonomic Weights Repository☆25Mar 31, 2022Updated 4 years ago
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- AmpliCI, a model-based algorithm for denoising Illumina amplicon data.☆25Nov 28, 2025Updated 9 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 4 months ago
- Sketch-based surveillance platform☆13Aug 14, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Aug 27, 2026Updated last week
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)☆14Dec 7, 2016Updated 9 years ago