connectome-neuprint / neuVid
Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.
☆26Updated 2 months ago
Related projects: ⓘ
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆21Updated this week
- ☆10Updated 3 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated 2 weeks ago
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆22Updated last week
- ☆34Updated this week
- 3D/4D volumetric rendering of microscopy data☆17Updated 3 weeks ago
- Python library for analysis of neuroanatomical data.☆80Updated this week
- A lightweight python package to download neuronal morphologies☆17Updated 2 weeks ago
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆20Updated this week
- A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of ne…☆126Updated last month
- A modular package to control stimulation and track behaviour☆42Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated 2 weeks ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆43Updated this week
- Segmentation of anatomical structures in a common coordinate space☆28Updated this week
- ☆29Updated 11 months ago
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆10Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆49Updated 4 years ago
- Visualise brainreg registration output☆10Updated 2 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆45Updated last week
- Utility to create a basic Python project structure with tests, CI etc.☆22Updated 2 weeks ago
- Tools for working with single-neuron morphological reconstructions☆19Updated 4 months ago
- Efficient cell detection in large images using cellfinder in napari☆24Updated 8 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 9 months ago
- Brainways☆14Updated this week
- Loading and saving of image data.☆10Updated 7 months ago
- A curated list of awesome Janelia software☆14Updated last month
- A napari plugin for making animations☆76Updated 2 weeks ago
- Linking napari layers with Matplotlib plots☆38Updated this week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆14Updated 8 months ago
- pipeline for volumetric cell segmentation☆10Updated this week