Alternatives and similar repositories for intern

Users that are interested in intern are comparing it to the libraries listed below

• CAVEconnectome / PyChunkedGraph
  Data backend for fast proofreading of cell segmentations in connectomics datasets
  ☆26Updated last month
• YuelongWu / feabas
  Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data
  ☆20Updated 3 weeks ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆63Updated last month
• CAVEconnectome / nglui
  ☆13Updated 2 months ago
• seung-lab / fastremap
  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.
  ☆63Updated last month
• allen-cell-animated / agave
  High quality visualization for volumetric image data
  ☆54Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆87Updated this week
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 9 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆169Updated this week
• JaneliaSciComp / VVDViewer
  3D/4D volumetric rendering of microscopy data
  ☆26Updated 2 months ago
• JaneliaSciComp / JaneliaDataStandards
  A pilot experiment to dissminate information about Janelia's biomaging data formats.
  ☆12Updated 11 months ago
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆18Updated last month
• CAVEconnectome / MeshParty
  ☆39Updated 4 months ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆18Updated 9 months ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆43Updated 5 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated 2 weeks ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 10 months ago
• ome / ome2024-ngff-challenge
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
  ☆20Updated 3 months ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆59Updated 3 weeks ago
• seung-lab / chunkflow
  Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
  ☆55Updated 6 months ago
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated this week
• JaneliaSciComp / pydantic-ome-ngff
  Pydantic models for OME-NGFF
  ☆24Updated 3 months ago
• InsightSoftwareConsortium / GetYourBrainTogether
  Get Your Brain Together Neuroimage Registration Workshops and Hackathons
  ☆21Updated last year
• haesleinhuepf / napari-assistant
  ☆33Updated 8 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆91Updated 3 weeks ago
• abcucberkeley / PetaKit5D
  ☆49Updated last month
• napari / napari-animation
  A napari plugin for making animations
  ☆92Updated this week
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆55Updated this week
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆87Updated this week