Python SDK for interacting with the BossDB REST API
☆22Apr 18, 2025Updated 10 months ago
Alternatives and similar repositories for intern
Users that are interested in intern are comparing it to the libraries listed below
Sorting:
- python interface to neurodata code☆18Jul 15, 2019Updated 6 years ago
- ☆40Sep 1, 2025Updated 6 months ago
- ☆17Jul 6, 2023Updated 2 years ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆35Feb 27, 2026Updated last week
- Read and write Neuroglancer datasets programmatically.☆170Updated this week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Updated this week
- Data backend for fast proofreading of cell segmentations in connectomics datasets☆27Updated this week
- Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.☆44Feb 26, 2026Updated last week
- code for storing neurodata images and image annotations☆37Oct 1, 2017Updated 8 years ago
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆33Jan 3, 2025Updated last year
- A set of tools to assist in aligning (registering) large numbers of EM images into a coherent image volume in two and three dimensions.☆15Apr 13, 2019Updated 6 years ago
- An embedded in-memory openCypher implementation for Go☆16Jan 21, 2024Updated 2 years ago
- Storing and accessing large Julia array locally or in cloud storage without server.☆13Jan 29, 2022Updated 4 years ago
- scripts for using spark on janelia's cluster☆13Nov 12, 2023Updated 2 years ago
- ☆13Updated this week
- Mesh generation from sparse matrices☆23Nov 5, 2025Updated 4 months ago
- Command line tool for registration of very large 3D volumes.☆16Jan 28, 2026Updated last month
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Dec 10, 2025Updated 2 months ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆23Updated this week
- Shared repo for EM connectomics and Array Tomography render based image processing modules☆17Mar 2, 2026Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆20Feb 20, 2026Updated 2 weeks ago
- Python library for analysis of neuroanatomical data.☆111Mar 2, 2026Updated last week
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 11 months ago
- Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.☆43Jul 28, 2025Updated 7 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆22Feb 24, 2026Updated last week
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated last month
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Oct 22, 2025Updated 4 months ago
- A framework for easy application of established machine learning techniques on large, multi-dimensional images.☆60Sep 15, 2025Updated 5 months ago
- The RPC library used in ImJoy.☆25Jul 23, 2024Updated last year
- Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.☆114May 25, 2025Updated 9 months ago
- Distributed Gradient-Domain Processing of Planar and Spherical Images☆26Dec 30, 2020Updated 5 years ago
- ☆25Jun 3, 2024Updated last year
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆55Jun 20, 2025Updated 8 months ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆66Updated this week
- Flood filling networks for segmenting electron microscopy of neural tissue☆25Dec 26, 2022Updated 3 years ago
- WebGL-based viewer for volumetric data☆24Updated this week
- Helpers to use BigDataViewer as a quick visualization tool in other projects.☆25Jun 13, 2024Updated last year
- Asynchronous serverless task queue with timed leasing of tasks. Threaded implementations for SQS and local filesystem.☆39Jul 2, 2025Updated 8 months ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year