YijieYin / connectome_interpreterLinks
☆23Updated this week
Alternatives and similar repositories for connectome_interpreter
Users that are interested in connectome_interpreter are comparing it to the libraries listed below
Sorting:
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated last week
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆19Updated last month
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated 2 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- Browser-based NWB visualization and DANDI exploration☆62Updated 2 weeks ago
- Tools for working with single-neuron morphological reconstructions☆22Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago
- Mix-and-match computer vision tools for your animal behaviour analysis☆21Updated last week
- Demo code for CAPTURE and DANNCE☆29Updated 4 years ago
- ☆12Updated 9 years ago
- A Python interface to access neuroanatomical atlases☆167Updated last week
- Napari plugin for working with video files.☆13Updated 3 months ago
- A Python package to download neuronal morphologies☆17Updated last week
- A flexible pipeline for analyzing zebrafish locomotion☆12Updated 6 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆35Updated last week
- Automated 3D cell detection in very large images☆222Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- ☆34Updated 6 months ago
- Segmentation of anatomical structures in a common coordinate space☆34Updated last week
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- a visualization method for neural data☆239Updated 8 months ago
- Fast, volumetric cell detection. In development.☆20Updated last month
- GPU-based 3D non-rigid volumetric registration☆41Updated 3 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Live Mouse Tracker analysis☆33Updated last week
- ☆52Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆110Updated 2 months ago