william-silversmith / countlessLinks
Code and performance tests to demonstrate the COUNTLESS algorithm. https://medium.com/@willsilversmith/countless-high-performance-2x-downsampling-of-labeled-images-using-numpy-e70ad3275589
☆10Updated 5 years ago
Alternatives and similar repositories for countless
Users that are interested in countless are comparing it to the libraries listed below
Sorting:
- Automatic segmentation of electron microscopy volumes☆31Updated 12 years ago
- Fill holes in binary 2D & 3D images fast.☆21Updated 3 months ago
- 2D image registration in python, using napari.☆16Updated 3 years ago
- Source code for Reconstruct☆7Updated 6 years ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- ☆35Updated 3 years ago
- ☆15Updated 5 years ago
- DRMIME - Differentiable Mutual Information and Matrix Exponential for Multi-Resolution Image Registration☆46Updated 5 years ago
- A collection of tools for the analysis of biological data☆12Updated 9 years ago
- Linear and non-linear image registration methods, using scipy and numpy.☆63Updated 12 years ago
- A visualization library for PyTorch tensors☆19Updated 2 years ago
- A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers☆52Updated 3 years ago
- A production quality data pipeline for DICOM images segmentation.☆12Updated 7 years ago
- Interactive registration tool for 3D medical datasets☆33Updated 11 months ago
- MICCAI 2017 Paper - Optimal Transport for Diffeomorphic Registration☆55Updated 6 years ago
- Image Deconvolution via Noise-Tolerant Self-Supervised Inversion☆30Updated 8 months ago
- A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images☆14Updated 6 years ago
- A highly configurable toolkit for training 3D/2D CNNs and general Neural Networks (superceded by https://github.com/ELEKTRONN/elektronn3)☆38Updated 3 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆16Updated 3 years ago
- PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…☆18Updated 5 years ago
- Grabber: A Tool to Improve Convergence in Interactive Image Segmentation☆18Updated 2 years ago
- 3D and 2D Image processing algorithms in Python for tissues☆13Updated 9 months ago
- [MICCAI2019 & TMI2020] Overfitting under Class Imbalance: Anaylsis and Improvements for Medical Image Segmentation.☆22Updated last year
- Image Registration and Computational Anatomy in PyTorch☆21Updated 4 years ago
- ☆11Updated 4 years ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- Hyppopy is a python toolbox for blackbox optimization. It's purpose is to offer a unified and easy to use interface to a collection of so…☆27Updated 3 years ago
- Bone segmentation in CT scans using Deep Convolutional Neural Networks☆31Updated 8 years ago
- Source code for X. Yang et al., "Fast Predictive Image Registration"☆12Updated 8 years ago
- Nonparametric Joint Shape and Feature Priors for Image Segmentation - IEEE Transactions on Image Processing 2017☆9Updated 7 years ago