Alternatives and similar repositories for GOSemSim:

Users that are interested in GOSemSim are comparing it to the libraries listed below

• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆47Updated 3 months ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆62Updated 3 months ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆35Updated 6 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆59Updated 5 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆47Updated 3 months ago
• nf-core / circrna
  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
  ☆48Updated this week
• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆47Updated this week
• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆60Updated last year
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated last year
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆43Updated last year
• benben-miao / TOmicsVis
  Transcriptomics Visualization R package.
  ☆68Updated last year
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆104Updated 5 months ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆53Updated 6 months ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆56Updated 4 years ago
• hamidghaedi / Enrichment-Analysis
  From RNA-seq raw reads to enriched pathways by DEGs
  ☆32Updated 8 months ago
• GoekeLab / proActiv
  Estimation of Promoter Activity from RNA-Seq data
  ☆50Updated 2 years ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆73Updated last year
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆46Updated last year
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆42Updated 4 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆61Updated 8 months ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 9 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆86Updated 5 months ago
• rhondabacher / ISMB2019_SingleCellTutorial
  Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…
  ☆39Updated 5 years ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆50Updated 3 years ago