nasqar / ClusterProfShinyGSEALinks
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
☆16Updated 5 years ago
Alternatives and similar repositories for ClusterProfShinyGSEA
Users that are interested in ClusterProfShinyGSEA are comparing it to the libraries listed below
Sorting:
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆30Updated 6 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Molecular Signatures Database (MSigDB) in a tidy data frame☆26Updated last month
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- R package wrapping bedtools☆43Updated 6 months ago
- documentation for trackViewer☆29Updated 6 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- An R for fast and flexible DNA methylation analysis☆33Updated 2 months ago
- Development repository for the multiMiR database's R API☆20Updated last year
- An R interface to the MEME Suite☆52Updated 3 months ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆15Updated 7 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆29Updated 5 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- workshop website on readthedocs☆19Updated 2 weeks ago
- a set of NGS pipelines☆24Updated last week
- iread☆25Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 8 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 8 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago