nasqar / ClusterProfShinyGSEALinks
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
☆16Updated 6 years ago
Alternatives and similar repositories for ClusterProfShinyGSEA
Users that are interested in ClusterProfShinyGSEA are comparing it to the libraries listed below
Sorting:
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- R package for genomic feature analysis and visualization☆79Updated 9 months ago
- Explore the cancer relevance of your gene list☆52Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆30Updated 10 years ago
- An R for fast and flexible DNA methylation analysis☆35Updated 2 months ago
- Molecular Signatures Database (MSigDB) in a tidy data frame☆26Updated last week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆32Updated 10 months ago
- R package wrapping bedtools☆44Updated 10 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- DriverPower☆26Updated last year
- documentation for trackViewer☆29Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Updated 3 years ago
- ☆29Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 weeks ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- Identify and correct invalid gene symbols☆62Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Updated 2 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Updated 5 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 6 months ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆15Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Differential Count Data Analysis Toolbox☆61Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago