YFan1997 / Baby-sitting-bioinformaticsView external linksLinks
This repository is my notes and experience in discovering bioinformatics world, will keep updating and hopefully it could help others in learning bioinformatics world
☆46Feb 21, 2025Updated 11 months ago
Alternatives and similar repositories for Baby-sitting-bioinformatics
Users that are interested in Baby-sitting-bioinformatics are comparing it to the libraries listed below
Sorting:
- 2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS☆14Feb 3, 2016Updated 10 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- ☆22May 27, 2025Updated 8 months ago
- 单细胞分析的中文pipeline☆268Apr 5, 2024Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Sep 20, 2024Updated last year
- ☆41Feb 23, 2025Updated 11 months ago
- ☆93Aug 10, 2025Updated 6 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated last month
- Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life☆47Apr 9, 2025Updated 10 months ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Deep Learning MRI image analysis☆44Aug 3, 2022Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- Tutorial for scRNA-seq data analysis beginners using R☆243Mar 5, 2025Updated 11 months ago
- R package lcmm☆73Oct 21, 2025Updated 3 months ago
- Spatial Cellular Estimator for Tumors☆61Updated this week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆70Apr 22, 2024Updated last year
- benchmarking challenge for finding neurons in imaging data☆75Apr 10, 2019Updated 6 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆81Dec 5, 2022Updated 3 years ago
- General tools for genomic analyses.☆386Feb 28, 2025Updated 11 months ago
- Awesome-AI-Virtual-Cell☆168Feb 5, 2026Updated last week
- ☆101Sep 30, 2025Updated 4 months ago
- A factor analysis package☆106May 8, 2012Updated 13 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Jul 6, 2023Updated 2 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆111Oct 16, 2023Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Feb 23, 2023Updated 2 years ago
- ☆114Apr 24, 2024Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆123Aug 18, 2024Updated last year
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆130Mar 22, 2023Updated 2 years ago
- Machine learning-based integration model with elegant performance☆183Sep 23, 2025Updated 4 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated this week
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Aug 3, 2025Updated 6 months ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- ☆646Jan 12, 2026Updated last month
- Harmonization of multi-site imaging data with ComBat (Python)☆163Apr 20, 2023Updated 2 years ago