Alternatives and similar repositories for Baby-sitting-bioinformatics

Users that are interested in Baby-sitting-bioinformatics are comparing it to the libraries listed below

• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆227Updated last year
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆288Updated 2 years ago
• Starlitnightly / omicverse
  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
  ☆685Updated last week
• hbctraining / scRNA-seq
  ☆571Updated 4 years ago
• hbctraining / Intro-to-scRNAseq
  ☆611Updated 3 months ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆142Updated 2 years ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆428Updated 8 months ago
• gao-lab / Guideline-for-Computational-Biology-and-Bioinformatics
  ☆351Updated 2 months ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆527Updated last year
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆433Updated 3 weeks ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆299Updated last month
• jmzeng1314 / tcga_example
  ☆288Updated 6 years ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆207Updated 4 months ago
• STOmics / Stereopy
  A toolkit of spatial transcriptomic analysis.
  ☆257Updated 3 weeks ago
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆307Updated 4 months ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆433Updated last year
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆312Updated last month
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆523Updated 3 weeks ago
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆344Updated 2 months ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆497Updated 2 weeks ago
• jmzeng1314 / 5years
  ☆244Updated 5 years ago
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆219Updated 3 months ago
• dmcable / spacexr
  Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …
  ☆381Updated this week
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆713Updated 2 weeks ago
• jmzeng1314 / GEO
  ☆838Updated 2 years ago
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆460Updated last year
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆352Updated 4 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆471Updated 2 months ago
• IanevskiAleksandr / sc-type
  ☆269Updated 8 months ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆410Updated last month