YFan1997 / Baby-sitting-bioinformaticsView external linksLinks
This repository is my notes and experience in discovering bioinformatics world, will keep updating and hopefully it could help others in learning bioinformatics world
☆46Feb 21, 2025Updated 11 months ago
Alternatives and similar repositories for Baby-sitting-bioinformatics
Users that are interested in Baby-sitting-bioinformatics are comparing it to the libraries listed below
Sorting:
- Code required to reproduce the analysis made in Kiviaho et al. 2024☆12Nov 29, 2024Updated last year
- ☆15Jan 28, 2023Updated 3 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- Code for the paper "ClinicalBench: Can LLMs Beat Traditional ML Models in Clinical Prediction?"☆31Jun 18, 2025Updated 7 months ago
- 单细胞分析的中文pipeline☆268Apr 5, 2024Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Sep 20, 2024Updated last year
- ☆41May 16, 2025Updated 9 months ago
- ☆93Aug 10, 2025Updated 6 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated last month
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Deep Learning MRI image analysis☆44Aug 3, 2022Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Tutorial for scRNA-seq data analysis beginners using R☆243Mar 5, 2025Updated 11 months ago
- Spatial Cellular Estimator for Tumors☆61Feb 9, 2026Updated last week
- Capybara: A computational tool to measure cell identity and fate transitions☆60May 23, 2022Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆70Apr 22, 2024Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Feb 5, 2026Updated last week
- ENCODE ChIP-seq pipeline☆278Feb 15, 2024Updated 2 years ago
- Align multiple amino acid or nucleotide sequences.☆73Sep 17, 2020Updated 5 years ago
- "Orchestrating Spatial Transcriptomics Analysis with Bioconductor" (OSTA) online book☆107Nov 29, 2025Updated 2 months ago
- Awesome-AI-Virtual-Cell☆168Feb 5, 2026Updated last week
- Visualization of electronic medical records or other sequence event data.☆93Mar 8, 2019Updated 6 years ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆106Jul 6, 2023Updated 2 years ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆111Oct 16, 2023Updated 2 years ago
- iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of auto…☆122Apr 15, 2024Updated last year
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- ☆114Apr 24, 2024Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Apr 9, 2020Updated 5 years ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆130Mar 22, 2023Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆135Nov 6, 2024Updated last year
- Machine learning-based integration model with elegant performance☆183Sep 23, 2025Updated 4 months ago
- Analysis of single cell RNA-seq data course☆163Aug 8, 2022Updated 3 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆153Aug 3, 2025Updated 6 months ago
- ☆646Jan 12, 2026Updated last month
- Harmonization of multi-site imaging data with ComBat (Python)☆163Apr 20, 2023Updated 2 years ago
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,548Dec 11, 2022Updated 3 years ago
- An implement R package to visualize GSEA results☆209Dec 8, 2025Updated 2 months ago