Alternatives and similar repositories for single_cell_tutorial

Users that are interested in single_cell_tutorial are comparing it to the libraries listed below

• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆303Updated 3 weeks ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆352Updated last week
• STOmics / Stereopy
  A toolkit of spatial transcriptomic analysis.
  ☆272Updated 2 months ago
• ixxmu / mp_duty
  抓取网络文章到github issues保存
  ☆179Updated last week
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆623Updated 2 months ago
• jmzeng1314 / scRNA_smart_seq2
  ☆319Updated 6 years ago
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆161Updated 3 years ago
• Winnie09 / GPTCelltype
  ☆220Updated last year
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆452Updated last year
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆373Updated last month
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆273Updated last month
• STOmics / SAW
  ☆183Updated last year
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆535Updated 4 months ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆461Updated 8 months ago
• IanevskiAleksandr / sc-type
  ☆285Updated last year
• Starlitnightly / omicverse
  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
  ☆834Updated this week
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆236Updated 3 weeks ago
• jmzeng1314 / my_WGCNA
  ☆295Updated 6 years ago
• jmzeng1314 / tcga_example
  ☆294Updated 6 years ago
• liulab-dfci / TRUST4
  TCR and BCR assembly from RNA-seq data
  ☆338Updated 2 weeks ago
• ayueme / easyTCGA
  📦R包：Make TCGA download and prepare easy!
  ☆152Updated 4 months ago
• Lindsey-LCFoong / Analysing-10X-ScRNA-data-Wang-et-al-2020-Nat-Commun-
  I redo the ScRNA analysis in the paper of Wang et al 2020, Nat Comm. Here's my modified script for Helen He Zhu github (https://github.co…
  ☆12Updated 4 years ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆463Updated last year
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆451Updated this week
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆208Updated last month
• gao-lab / Guideline-for-Computational-Biology-and-Bioinformatics
  ☆372Updated 9 months ago
• mdozmorov / scATAC-seq_notes
  scATAC-seq data analysis tools and papers
  ☆128Updated 7 months ago
• Teichlab / cellphonedb
  ☆358Updated 4 years ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆292Updated last week
• navinlabcode / copykat
  ☆268Updated 3 months ago