Awesome-AI-Virtual-Cell: A curated list of papers, datasets, benchmarks, talks, and community resources for AI-powered virtual cell research.
☆248May 27, 2026Updated this week
Alternatives and similar repositories for Awesome-Virtual-Cell
Users that are interested in Awesome-Virtual-Cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆38Sep 3, 2025Updated 8 months ago
- An official implementation of "Directed Chemical Evolution via Navigating Molecular Encoding Space.", which is a foundational model to br…☆38Feb 3, 2026Updated 3 months ago
- Arc Virtual Cell Atlas☆522Feb 12, 2026Updated 3 months ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆585May 4, 2026Updated 3 weeks ago
- Collection of papers for Molecular Representation using AI☆37Feb 21, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learning☆29Dec 15, 2025Updated 5 months ago
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆23Oct 31, 2025Updated 6 months ago
- A tool that helps finding decoy molecules for a given target, provided a set of active molecules.☆17Feb 24, 2022Updated 4 years ago
- ☆449Jan 21, 2026Updated 4 months ago
- The code for "Learning Molecular Representation in a Cell"☆42Mar 6, 2025Updated last year
- ☆12Oct 9, 2024Updated last year
- ☆51Jun 16, 2025Updated 11 months ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆13Jul 9, 2025Updated 10 months ago
- Baseline model for PPB-Affinity benchmark data☆39May 21, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆173Jan 30, 2026Updated 4 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆25Aug 6, 2025Updated 9 months ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- ☆23Apr 20, 2025Updated last year
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated last year
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆33Updated this week
- PDD: Awesome Phenotypic Drug Discovery☆41Oct 17, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package for InfoAlign☆13Oct 14, 2024Updated last year
- PyChem-Pro: a molecular viewer, cheminformatics library, molecular descriptor calculator, molecular editor, chemical drawing editor, and …☆165Updated this week
- [NeurIPS 2023] "Understanding the Limitations of Deep Models for Molecular Property Prediction: Insights and Solutions"☆12Jan 26, 2024Updated 2 years ago
- Hierarchical Deep Multiple Instance Learning☆13Jun 30, 2023Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 9 months ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆130Apr 28, 2026Updated last month
- ☆25Aug 15, 2023Updated 2 years ago
- ☆20May 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VCWorld: A Biological World Model for Virtual Cell Simulation☆62Apr 7, 2026Updated last month
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆18May 7, 2024Updated 2 years ago
- ☆41Jan 19, 2026Updated 4 months ago
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆21Apr 4, 2024Updated 2 years ago
- ☆14Jul 1, 2025Updated 10 months ago
- Knowledge graph enhanced LLM for binding affinity prediction☆14Aug 20, 2024Updated last year
- ☆34Jan 26, 2022Updated 4 years ago