Awesome-AI-Virtual-Cell: A curated list of papers, datasets, benchmarks, talks, and community resources for AI-powered virtual cell research.
☆201Mar 20, 2026Updated last week
Alternatives and similar repositories for Awesome-Virtual-Cell
Users that are interested in Awesome-Virtual-Cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆32Sep 3, 2025Updated 6 months ago
- An official implementation of "Directed Chemical Evolution via Navigating Molecular Encoding Space.", which is a foundational model to br…☆32Feb 3, 2026Updated last month
- Arc Virtual Cell Atlas☆508Feb 12, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆556Feb 24, 2026Updated last month
- Collection of papers for Molecular Representation using AI☆37Feb 21, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆21Oct 31, 2025Updated 4 months ago
- GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learning☆27Dec 15, 2025Updated 3 months ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆11Jul 9, 2025Updated 8 months ago
- ☆48Jun 16, 2025Updated 9 months ago
- ☆415Jan 21, 2026Updated 2 months ago
- A tool that helps finding decoy molecules for a given target, provided a set of active molecules.☆16Feb 24, 2022Updated 4 years ago
- design pipeline for protein, nucleic acid, and small molecule☆42Mar 5, 2026Updated 3 weeks ago
- The code for "Learning Molecular Representation in a Cell"☆40Mar 6, 2025Updated last year
- ☆12Oct 9, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆147Jan 30, 2026Updated 2 months ago
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆23Aug 6, 2025Updated 7 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- ☆22Apr 20, 2025Updated 11 months ago
- single-cell Nucleosome Methylation Transcription☆14Mar 5, 2018Updated 8 years ago
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated last year
- Functional and Learnable Cell dynamicS☆21May 13, 2025Updated 10 months ago
- VCWorld: A Biological World Model for Virtual Cell Simulation☆40Feb 7, 2026Updated last month
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆113Mar 16, 2026Updated 2 weeks ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆29Dec 26, 2025Updated 3 months ago
- PDD: Awesome Phenotypic Drug Discovery☆41Oct 17, 2025Updated 5 months ago
- Python package for InfoAlign☆13Oct 14, 2024Updated last year
- [NeurIPS 2023] "Understanding the Limitations of Deep Models for Molecular Property Prediction: Insights and Solutions"☆12Jan 26, 2024Updated 2 years ago
- Hierarchical Deep Multiple Instance Learning☆11Jun 30, 2023Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 7 months ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆54Feb 18, 2026Updated last month
- ☆22Jun 14, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Spatiotemporal modeling of spatial transcriptomics☆333Feb 25, 2026Updated last month
- ☆20May 1, 2023Updated 2 years ago
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆17May 7, 2024Updated last year
- ☆39Jan 19, 2026Updated 2 months ago
- ☆13Feb 19, 2024Updated 2 years ago
- ☆12Jun 24, 2025Updated 9 months ago
- ☆100Aug 26, 2025Updated 7 months ago