Alternatives and similar repositories for Awesome-Virtual-Cell

Users that are interested in Awesome-Virtual-Cell are comparing it to the libraries listed below

• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆71Updated last year
• jkobject / geneformer
  ☆88Updated 4 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆139Updated last month
• ArcInstitute / state
  State is a machine learning model that predicts cellular perturbation response across diverse contexts
  ☆479Updated this week
• theislab / single-cell-transformer-papers
  ☆335Updated 7 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆64Updated last year
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆86Updated 2 weeks ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆377Updated 2 weeks ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆103Updated 3 weeks ago
• biomap-research / scFoundation
  ☆380Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆100Updated last year
• yhr91 / GEARS_misc
  ☆25Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆81Updated 10 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆135Updated 10 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆322Updated 10 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆234Updated 10 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆58Updated 5 months ago
• TencentAILabHealthcare / scBERT
  ☆341Updated 2 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆104Updated last week
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆96Updated 10 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• zou-group / GenePert
  GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction
  ☆16Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• gersteinlab / CellForge
  ☆122Updated last month
• const-ae / linear_perturbation_prediction-Paper
  ☆67Updated 5 months ago
• siyuh / Squidiff
  ☆96Updated last month
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆158Updated 10 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆113Updated last week
• Genentech / SpatialAgent
  ☆134Updated 8 months ago
• Genentech / PerturbQA
  ☆35Updated 3 months ago