xzhouai / NNPLinks
Neural Network for Polygenic score analysis
☆16Updated 2 years ago
Alternatives and similar repositories for NNP
Users that are interested in NNP are comparing it to the libraries listed below
Sorting:
- Framework for Interpretable Neural Networks☆113Updated 9 months ago
- ☆33Updated 11 months ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆42Updated last week
- Python module for genetic analyses☆17Updated this week
- Cross-population polygenic prediction☆96Updated 2 months ago
- ☆100Updated this week
- MetaXcan software and manuscript☆184Updated 6 months ago
- pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …☆89Updated last year
- UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).☆139Updated 6 months ago
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆89Updated last year
- ☆51Updated 5 months ago
- Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…☆221Updated last year
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆76Updated 6 months ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆31Updated 2 months ago
- ☆25Updated 3 months ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Updated 4 years ago
- Modular framework for deep learning predictions on methylation data.☆55Updated 5 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆30Updated last year
- Analyses conducting GWAS across the UKBB diverse superpopulations☆62Updated 2 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆266Updated this week
- Comprehensive tutorial for differential methylation analysis, differential variability analysis and integrative analysis☆29Updated last year
- Predict epigenetic age from DNA methylation data☆66Updated last month
- Configs and descriptions of circos plots created on FUMA web application☆15Updated 8 years ago
- A new extended cell deconvolution for peripheral blood☆18Updated 10 months ago
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Updated last year
- This project consists of three parts: Random forest model for GC diagnosis and Predict the survival outcomes of GC patient using RSF meth…☆31Updated last year
- A list of positions (mostly biology-related) open to apply☆38Updated 8 months ago
- Genome-wide association studies tutorial 🧬☆53Updated 6 years ago
- A package to estimate biological organ age using SomaScan plasma proteomics data☆64Updated last year