DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
☆21Dec 1, 2021Updated 4 years ago
Alternatives and similar repositories for DeepCC
Users that are interested in DeepCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- ☆26Sep 8, 2020Updated 5 years ago
- a deep learning approach for integrative cancer subtyping of multi-omics data☆40May 5, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Nov 16, 2020Updated 5 years ago
- personal genome constructor☆10May 29, 2025Updated 10 months ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 5 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Apr 12, 2023Updated 2 years ago
- ☆12Apr 28, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- ☆13Jun 24, 2016Updated 9 years ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Extended ComplexHeatmap☆11Jan 5, 2025Updated last year
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆19Sep 4, 2025Updated 7 months ago
- A continually expanding collection of cancer genomics notes and data☆119Feb 6, 2026Updated 2 months ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆12Mar 3, 2017Updated 9 years ago
- ☆66Nov 14, 2023Updated 2 years ago
- A R library of pseudo-random number generators written in C++☆13Feb 25, 2026Updated last month
- ☆11Jun 13, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 8 months ago
- Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018)☆10Updated this week
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Generate signature matrix from single cell data.☆11Apr 13, 2021Updated 4 years ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- Assessing the quality of genomes using busco☆14Mar 23, 2023Updated 3 years ago
- The release version of OMCmf code for paper "One-pass Multi-view Clustering with Matrix Factorization"☆13Nov 30, 2021Updated 4 years ago