CityUHK-CompBio / DeepCCLinks
DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
☆19Updated 3 years ago
Alternatives and similar repositories for DeepCC
Users that are interested in DeepCC are comparing it to the libraries listed below
Sorting:
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 9 months ago
- ☆22Updated 5 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- ☆22Updated 5 years ago
- ☆61Updated 4 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 9 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆22Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 4 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 3 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Normalization for single cell RNA-seq data☆47Updated 2 weeks ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- ☆34Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆51Updated 7 months ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 10 months ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 4 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago