DeepCC: a novel deep learning-based framework for cancer molecular subtype classification
☆21Dec 1, 2021Updated 4 years ago
Alternatives and similar repositories for DeepCC
Users that are interested in DeepCC are comparing it to the libraries listed below
Sorting:
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- ☆26Sep 8, 2020Updated 5 years ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- a deep learning approach for integrative cancer subtyping of multi-omics data☆40May 5, 2024Updated last year
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Nov 16, 2020Updated 5 years ago
- personal genome constructor☆10May 29, 2025Updated 9 months ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- Image search based on convolutional neural network feature extraction.☆14May 11, 2018Updated 7 years ago
- Auto-annotations from Mouse brain development☆12Jul 11, 2020Updated 5 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Apr 12, 2023Updated 2 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- Small hack to draw date histogram facets as graph using nvd3.js☆54Nov 21, 2012Updated 13 years ago
- Notes in markdown for clinical medicine (mainly in Chinese)☆14Mar 6, 2026Updated 2 weeks ago
- ☆13Jun 24, 2016Updated 9 years ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution☆10Jan 31, 2020Updated 6 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- ActiveDriverDB☆12May 1, 2023Updated 2 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Extended ComplexHeatmap☆11Jan 5, 2025Updated last year
- Trading bot for cryptocurrencies with recurrent neural networks.☆10Mar 24, 2015Updated 10 years ago
- A continually expanding collection of cancer genomics notes and data☆117Feb 6, 2026Updated last month
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- Slides, code, and supplemental materials for the LiveLesson: Working with Big Data: Infrastructure, Algorithms, and Visualizations☆55Oct 11, 2012Updated 13 years ago
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆18Sep 4, 2025Updated 6 months ago
- NGS perl modules☆11Updated this week
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Jul 13, 2020Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.☆11Mar 3, 2017Updated 9 years ago
- ☆66Nov 14, 2023Updated 2 years ago
- ☆11Jun 13, 2024Updated last year