zhouzilu / iCNV
Integrated copy number variation detection toolset
☆26Updated 5 years ago
Alternatives and similar repositories for iCNV:
Users that are interested in iCNV are comparing it to the libraries listed below
- ☆13Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- GTEx analysis scripts☆20Updated 8 years ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆34Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆23Updated 8 months ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆25Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆50Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- BISulfite-seq CUI Toolkit☆19Updated last week
- Version II of Mandalorion☆32Updated 6 years ago
- DriverPower☆26Updated 3 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 8 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago