zhouzilu / iCNV
Integrated copy number variation detection toolset
☆26Updated 5 years ago
Alternatives and similar repositories for iCNV
Users that are interested in iCNV are comparing it to the libraries listed below
Sorting:
- ☆25Updated 11 months ago
- GTEx analysis scripts☆20Updated 8 years ago
- ☆13Updated 7 years ago
- DriverPower☆26Updated 4 months ago
- ☆25Updated 7 years ago
- ☆34Updated 5 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆40Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- BISulfite-seq CUI Toolkit☆19Updated this week
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- ☆46Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆52Updated last month
- ☆24Updated 9 months ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago