zhouzilu / iCNVLinks
Integrated copy number variation detection toolset
☆26Updated 5 years ago
Alternatives and similar repositories for iCNV
Users that are interested in iCNV are comparing it to the libraries listed below
Sorting:
- ☆13Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- GTEx analysis scripts☆20Updated 8 years ago
- DriverPower☆26Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- ☆25Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆34Updated 5 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆19Updated 7 years ago
- ☆33Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- a set of NGS pipelines☆24Updated last week
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Genomic Association Tester☆31Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago