Xiangwen-Wang / ALDELELinks
A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.
☆10Updated last year
Alternatives and similar repositories for ALDELE
Users that are interested in ALDELE are comparing it to the libraries listed below
Sorting:
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- Deep learning based prediction of temperature dependent enzyme turnover rates☆14Updated 11 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 4 months ago
- A Unified Approach to Protein Engineering☆42Updated last year
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆25Updated 2 years ago
- Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest☆13Updated 2 years ago
- PyPEF – Pythonic Protein Engineering Framework☆24Updated last month
- ☆54Updated 3 months ago
- Plugin for folding sequences directly in PyMOL☆27Updated 3 months ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Updated 2 years ago
- Tools for molecular Docking☆27Updated 3 months ago
- Source code for The Protein Design Archive web application.☆10Updated 2 weeks ago
- ☆15Updated last month
- Efficient manipulation of protein structures in Python☆60Updated last month
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆81Updated last week
- Scores for Hydrophobicity and Charges based on SASAs☆39Updated 5 months ago
- Analysis of alphafold and colabfold results☆32Updated last month
- ☆29Updated 2 weeks ago
- ☆22Updated 3 weeks ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated 3 weeks ago
- AlphaFold-initiated replica exchange protein docking☆84Updated 5 months ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆29Updated last month
- ☆37Updated 7 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 2 weeks ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Updated 4 years ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆46Updated 2 weeks ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆32Updated 5 months ago
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆40Updated last week