tadorfer / protlearnLinks
A Python package for extracting protein sequence features
☆62Updated 3 years ago
Alternatives and similar repositories for protlearn
Users that are interested in protlearn are comparing it to the libraries listed below
Sorting:
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- ☆109Updated 2 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Neural networks for deep mutational scanning data☆72Updated 8 months ago
- Protein sequence classification with self-supervised pretraining☆82Updated 4 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated last week
- Modelling the Language of Life - Deep Learning Protein Sequences☆76Updated 5 years ago
- ☆110Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 5 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆122Updated 5 years ago
- Direct coupling analysis software for protein and RNA sequences☆58Updated 6 months ago
- Multi-task and masked language model-based protein sequence embedding models.☆105Updated 4 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Updated 2 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- ThermoNet is a computational method for quantitative prediction of the impact of single-point mutations on protein thermodynamic stabilit…☆119Updated 2 years ago
- ☆127Updated 4 years ago
- Evolutionary velocity with protein language models☆97Updated 2 months ago
- ☆20Updated 4 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Unconstrained lattice antibody-antigen bindings generator☆111Updated 2 months ago
- A Python 3 version of the protein descriptor package propy☆48Updated 3 years ago
- ☆36Updated last year
- Tool for modelling the CDRs of antibodies☆50Updated 3 years ago