ViennaRNA / RNAsketch
Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
☆20Updated 6 years ago
Alternatives and similar repositories for RNAsketch:
Users that are interested in RNAsketch are comparing it to the libraries listed below
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆21Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆34Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 6 months ago
- a collection of colabs useful for molecular biology☆31Updated 11 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last week
- Singularity recipe for AlphaFold☆34Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- A platform to do RNA science☆27Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 10 months ago
- ☆22Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 2 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 2 months ago
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- Tools for annotation, processing and ML for antibody sequences☆25Updated last week
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆19Updated 4 months ago
- ☆39Updated 3 years ago
- Evolutionary velocity with protein language models☆84Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated last year
- ☆24Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆30Updated 2 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- Peptide library design☆20Updated 4 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆39Updated 5 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Code for LazyAF pipeline☆21Updated last year