mircare / Porter5
Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
☆45Updated 4 years ago
Alternatives and similar repositories for Porter5
Users that are interested in Porter5 are comparing it to the libraries listed below
Sorting:
- A Python 3 version of the protein descriptor package propy☆41Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆59Updated last month
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 6 years ago
- Paratope Prediction using Deep Learning☆59Updated last year
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆17Updated 6 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- ☆29Updated 4 years ago
- ☆19Updated 4 years ago
- DeepContact Software☆26Updated 6 years ago
- The DSSP building software☆43Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆35Updated 3 months ago
- Direct coupling analysis software for protein and RNA sequences☆50Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- De novo protein structure prediction using iteratively predicted structural constraints☆57Updated 3 years ago
- A machine learning based protein disorder predictor.☆23Updated 5 months ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆86Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 4 years ago
- A Python package for extracting protein sequence features☆59Updated 2 years ago
- ResPRE is an algorithm for protein residue-residue contact-map prediction☆21Updated 5 years ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- PaccMann models for protein language modeling☆42Updated 3 years ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆65Updated 7 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- Fast and easy contact prediction.☆38Updated 11 months ago
- Deep convolutional neural networks for protein contact map prediction☆23Updated 5 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆17Updated 3 years ago