mircare / Porter5
Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
☆45Updated 4 years ago
Alternatives and similar repositories for Porter5:
Users that are interested in Porter5 are comparing it to the libraries listed below
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Updated 5 years ago
- A Python 3 version of the protein descriptor package propy☆39Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated 2 years ago
- a python module for generating protein contact maps and distance maps☆46Updated 7 years ago
- A machine learning based protein disorder predictor.☆21Updated 2 months ago
- PaccMann models for protein language modeling☆41Updated 3 years ago
- RaptorX-Property: a Standalone Package for Protein Structure Property Prediction☆15Updated 5 years ago
- Protein sequence classification with self-supervised pretraining☆83Updated 3 years ago
- Contact map alignment☆41Updated 3 years ago
- Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.☆107Updated last year
- Paratope Prediction using Deep Learning☆59Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆73Updated 4 years ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆53Updated 2 years ago
- The DSSP building software☆39Updated last year
- Create DSSP and HSSP files☆86Updated 6 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated 9 months ago
- ☆34Updated 3 years ago
- A Python package for extracting protein sequence features☆58Updated 2 years ago
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆49Updated last year
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆65Updated 5 months ago
- DeeplyTough: Learning Structural Comparison of Protein Binding Sites☆158Updated last year
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆71Updated last year
- ☆102Updated last year
- This repository contains the stand-alone tool for MusiteDeep server☆29Updated 4 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆49Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated last month
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆82Updated last year
- Recurrent Geometric Network in Pytorch☆29Updated 4 years ago
- Direct coupling analysis software for protein and RNA sequences☆49Updated last year
- De novo protein structure prediction using iteratively predicted structural constraints☆55Updated 2 years ago