mims-harvard / ProCyonLinks
ProCyon: A multimodal foundation model for protein phenotypes
☆33Updated 3 months ago
Alternatives and similar repositories for ProCyon
Users that are interested in ProCyon are comparing it to the libraries listed below
Sorting:
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆39Updated 3 months ago
- ☆26Updated 6 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆38Updated 8 months ago
- Biological prediction models made simple.☆43Updated last month
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Primary RNA sequence model☆38Updated last year
- ColabFold protocol☆51Updated 8 months ago
- Protein language model trained on coding DNA☆47Updated 8 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆70Updated 3 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆67Updated 3 weeks ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆42Updated 8 months ago
- ☆17Updated 9 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 2 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated last year
- Arnie-based DegScore tool.☆26Updated 2 years ago
- ☆37Updated 5 months ago
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆38Updated last week
- Repository for mRNA Paper and CodonBERT publication.☆130Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆38Updated 9 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆51Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 4 months ago
- ☆87Updated last week
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 6 months ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆25Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆66Updated 5 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last week
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month