Alternatives and similar repositories for deep-learning-gene-expression

Users that are interested in deep-learning-gene-expression are comparing it to the libraries listed below

• UofLBioinformatics / circDeep
  End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning
  ☆25Updated 5 years ago
• zeochoy / tcga-embedding
  using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data
  ☆21Updated 6 years ago
• fsct135 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 4 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 5 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆33Updated 6 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• bio-ontology-research-group / DeepMOCCA
  Graph Neural Network model for survival analysis from multi-omics data
  ☆14Updated 3 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆31Updated 3 months ago
• rezacsedu / Deep-Learning-for-Clustering-in-Bioinformatics
  Deep Learning-based Clustering Approaches for Bioinformatics
  ☆141Updated 4 years ago
• Sunysh / Genome-Deep-Learning
  ☆21Updated 5 years ago
• chenlabgccri / CancerTypePrediction
  This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".
  ☆54Updated 6 years ago
• nlapier2 / metapheno
  Repository for the T2D/obesity experiments run in the Metapheno paper
  ☆15Updated 6 years ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆34Updated 10 years ago
• abebual / Predicting-ICU-Patient-Clinical-Deterioration---Report
  For this project, I used publicly available Electronic Health Records (EHRs) datasets. The MIT Media Lab for Computational Physiology has…
  ☆18Updated last year
• ZigaSajovic / Consensus_Clustering
  An implementation of Consensus clustering in Python
  ☆62Updated last year
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆18Updated 5 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• cantinilab / momix-notebook
  ☆66Updated last year
• mila-iqia / gene-graph-conv
  Towards Gene Expression Convolutions using Gene Interaction Graphs
  ☆75Updated 3 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆56Updated last year
• rezacsedu / Neural-Ensemble-Method-for-Cancer-Prediction
  A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations
  ☆20Updated 3 years ago
• huangzhii / SALMON
  SALMON: Survival Analysis Learning with Multi-Omics Neural Networks
  ☆67Updated last year
• BiomedSciAI / biomed-multi-omic
  Build foundation model on RNA or DNA data
  ☆30Updated this week
• BoyuLyu / DL-based-Tumor-Classification
  Deep Learning Based Tumor Type Classification Using Gene Expression Data
  ☆26Updated last year
• ChihyunPark / DNN_for_ADprediction
  ☆20Updated 4 years ago
• CamaraLab / TDA-TCGA
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
  ☆11Updated 4 years ago