Alternatives and similar repositories for dolphinnext

Users that are interested in dolphinnext are comparing it to the libraries listed below

• stevekm / nextflow-demos
  Example Nextflow pipelines and programming techniques
  ☆107Updated 2 months ago
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 8 months ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated 2 years ago
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆104Updated 10 months ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆116Updated last month
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆78Updated last month
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆75Updated last year
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• SciLifeLab / NGI-RNAseq
  Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
  ☆51Updated 6 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last week
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆113Updated 6 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated this week
• s-andrews / SeqMonk
  SeqMonk NGS visualisation and analysis tool
  ☆49Updated last month
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆103Updated last week
• konradjk / loftee
  ☆179Updated 2 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆84Updated 2 months ago
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 6 months ago
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆105Updated last month
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• kmhernan / awesome-bioinformatics-formats
  Curated list of bioinformatics formats and publications
  ☆54Updated 6 years ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆134Updated 2 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆68Updated 5 months ago