EGA-archive / ega-download-clientLinks
A Python-based EGA download client
☆101Updated 9 months ago
Alternatives and similar repositories for ega-download-client
Users that are interested in ega-download-client are comparing it to the libraries listed below
Sorting:
- ☆117Updated last year
- ☆73Updated 2 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆56Updated last week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last month
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆82Updated last month
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- ☆116Updated last year
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆73Updated 3 weeks ago
- ☆69Updated last year
- HMMRATAC peak caller for ATAC-seq data☆100Updated 7 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆105Updated 4 years ago
- This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor …☆47Updated last week
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆134Updated 10 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Software program for checking sample matching for NGS data☆132Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆67Updated 2 weeks ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆68Updated 3 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆106Updated last year
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆111Updated 6 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆72Updated 9 months ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated 3 weeks ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago