EGA-archive / ega-download-clientLinks
A Python-based EGA download client
☆107Updated last year
Alternatives and similar repositories for ega-download-client
Users that are interested in ega-download-client are comparing it to the libraries listed below
Sorting:
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago
- ☆119Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆77Updated last month
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆71Updated last week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last week
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆142Updated last year
- Tools for working with BUS files☆101Updated 4 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- mgatk: mitochondrial genome analysis toolkit☆108Updated 8 months ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆155Updated 3 weeks ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆105Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A tool for bigWig files.☆119Updated 7 years ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- ☆72Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- ☆62Updated 5 years ago
- ☆78Updated 5 months ago
- ☆88Updated 3 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆130Updated last year