EGA-archive / ega-download-client
A Python-based EGA download client
☆95Updated 3 months ago
Alternatives and similar repositories for ega-download-client:
Users that are interested in ega-download-client are comparing it to the libraries listed below
- ☆116Updated last year
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆106Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆68Updated last month
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆146Updated 4 years ago
- ☆65Updated last year
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆79Updated 3 months ago
- ☆71Updated 8 months ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆93Updated 3 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- Software program for checking sample matching for NGS data☆126Updated 6 months ago
- Publication quality NGS track plotting☆109Updated 2 years ago
- ☆108Updated last year
- An R package for inferring the subclonal architecture of tumors☆117Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆95Updated 2 months ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆90Updated 5 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆49Updated 2 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last week
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆209Updated 7 months ago
- A tool for bigWig files.☆118Updated 6 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆61Updated last month
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆122Updated 4 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆124Updated 4 months ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆104Updated 5 months ago