Training and using TFFM/PSSM/4-bits + DNA shape classifiers
☆13Jun 11, 2018Updated 8 years ago
Alternatives and similar repositories for DNAshapedTFBS
Users that are interested in DNAshapedTFBS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TFFM framework☆13Sep 22, 2025Updated last year
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- R package for high-throughput DNA shape predictions and feature encoding☆20Jul 1, 2021Updated 5 years ago
- Base-pair resolution detection of transcription factor binding site by deep deconvolutional network☆11Sep 12, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Biopet docs☆17Aug 2, 2018Updated 8 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Jun 5, 2017Updated 9 years ago
- Analysis of Cancer Genomes; 2017 edition☆16Jan 21, 2018Updated 8 years ago
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Mar 5, 2018Updated 8 years ago
- ☆14May 26, 2020Updated 6 years ago
- Effector and Perturbation Estimation Engine (EPEE) conducts differential analysis of transcription factor activity from gene expression d…☆16Oct 3, 2019Updated 7 years ago
- MaxQuant Automated Pipeline☆24Jun 13, 2020Updated 6 years ago
- This repository contains a list of tools or methods that have been used in GIAB analysis☆28Nov 15, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 10 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- 3,722 AI × Biology papers from ICLR / ICML / NeurIPS (2010–2026) — browsable by venue & year☆21Jul 7, 2026Updated 3 months ago
- ☆42Jul 17, 2018Updated 8 years ago
- maze: match visualizer☆10Oct 11, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comprehensive and intelligent clinical phasing tool☆15Dec 3, 2022Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Mar 12, 2020Updated 6 years ago
- The official implementation for SETA (TIP 2024).☆12Feb 17, 2025Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 8 years ago
- stageR package☆13May 8, 2026Updated 5 months ago
- ☆20Jul 20, 2015Updated 11 years ago
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 8 years ago
- Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity☆40Jul 19, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Aug 23, 2025Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆36Oct 7, 2026Updated last week
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 6 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 5 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- A DL-based framework for sequence and shape motif identification in the human genome☆12May 26, 2023Updated 3 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago